skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Combinatorial Results on Barcode Lattices
Abstract A barcode is a finite multiset of intervals on the real line. Jaramillo-Rodriguez (2023) previously defined a map from the space of barcodes with a fixed number of bars to a set of multipermutations, which presented new combinatorial invariants on the space of barcodes. A partial order can be defined on these multipermutations, resulting in a class of posets known as combinatorial barcode lattices. In this paper, we provide a number of equivalent definitions for the combinatorial barcode lattice, show that its Möbius function is a restriction of the Möbius function of the symmetric group under the weak Bruhat order, and show its ground set is the Jordan-Hölder set of a labeled poset. Furthermore, we obtain formulas for the number of join-irreducible elements, the rank-generating function, and the number of maximal chains of combinatorial barcode lattices. Lastly, we make connections between intervals in the combinatorial barcode lattice and certain classes of matchings.  more » « less
Award ID(s):
1928930 2102921
PAR ID:
10528405
Author(s) / Creator(s):
;
Publisher / Repository:
Springer Science + Business Media
Date Published:
Journal Name:
Order
Volume:
42
Issue:
1
ISSN:
0167-8094
Format(s):
Medium: X Size: p. 193-209
Size(s):
p. 193-209
Sponsoring Org:
National Science Foundation
More Like this
  1. Bahoo, Yeganeh; Georgiou, Konstantinos (Ed.)
    We investigate the maximum subbarcode matching problem which arises from the study of persistent homology and introduce the subbarcode distance on barcodes. A barcode is a set of intervals which correspond to topological features in data and is the output of a persistent homology computation. A barcode A has a subbarcode matching to B if each interval in A matches to an interval in B which contains it. We present an algorithm which takes two barcodes, A and B, and returns a maximum subbarcode matching. 
    more » « less
  2. We investigate the rich combinatorial structure of premodel structures on finite lattices whose weak equivalences are closed under composition. We prove that there is a natural refinement of the inclusion order of weak factorization systems so that the intervals detect these composition closed premodel structures. In the case that the lattice in question is a finite total order, this natural order retrieves the Kreweras lattice of noncrossing partitions as a refinement of the Tamari lattice, and model structures can be identified with certain tricolored trees. 
    more » « less
  3. We study the Twisted Kitaev Quantum Double model within the framework of Local Topological Order (LTO). We extend its definition to arbitrary 2D lattices, enabling an explicit characterization of the ground state space through the invariant spaces of monomial representations. We reformulate the LTO conditions to include general lattices and prove that the twisted model satisfies all four LTO axioms on any 2D lattice. As a corollary, we show that its ground state space is a quantum error-correcting code. 
    more » « less
  4. Let $$G$$ be a graph with vertex set $$\{1,2,\ldots,n\}$$. Its bond lattice, $BL(G)$, is a sublattice of the set partition lattice. The elements of $BL(G)$ are the set partitions whose blocks induce connected subgraphs of $$G$$. In this article, we consider graphs $$G$$ whose bond lattice consists only of noncrossing partitions. We define a family of graphs, called triangulation graphs, with this property and show that any two produce isomorphic bond lattices. We then look at the enumeration of the maximal chains in the bond lattices of triangulation graphs. Stanley's map from maximal chains in the noncrossing partition lattice to parking functions was our motivation. We find the restriction of his map to the bond lattice of certain subgraphs of triangulation graphs. Finally, we show the number of maximal chains in the bond lattice of a triangulation graph is the number of ordered cycle decompositions. 
    more » « less
  5. Abstract Random DNA barcodes are a versatile tool for tracking cell lineages, with applications ranging from development to cancer to evolution. Here, we review and critically evaluate barcode designs as well as methods of barcode sequencing and initial processing of barcode data. We first demonstrate how various barcode design decisions affect data quality and propose a new design that balances all considerations that we are currently aware of. We then discuss various options for the preparation of barcode sequencing libraries, including inline indices and Unique Molecular Identifiers (UMIs). Finally, we test the performance of several established and new bioinformatic pipelines for the extraction of barcodes from raw sequencing reads and for error correction. We find that both alignment and regular expression-based approaches work well for barcode extraction, and that error-correction pipelines designed specifically for barcode data are superior to generic ones. Overall, this review will help researchers to approach their barcoding experiments in a deliberate and systematic way. 
    more » « less