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1. Multiple Lineages of Transmissible Neoplasia in the Basket Cockle ( C. nuttallii ) With Repeated Horizontal Transfer of Mitochondrial DNA

   https://doi.org/10.1111/mec.17682  

   Yonemitsu, Marisa_A; Sevigny, Jordana_K; Vandepas, Lauren_E; Dimond, James_L; Giersch, Rachael_M; Gurney‐Smith, Helen_J; Abbott, Cathryn_L; Supernault, Janine; Withler, Ruth; Smith, Peter_D; et al (February 2025, Molecular Ecology)

   ABSTRACT Transmissible cancers are clonal lineages of neoplastic cells able to infect multiple hosts, spreading through populations in the environment as an infectious disease. Transmissible cancers have been identified in Tasmanian devils, dogs, and bivalves. Several lineages of bivalve transmissible neoplasias (BTN) have been identified in multiple bivalve species. In 2019 in Puget Sound, Washington, USA, disseminated neoplasia was observed in basket cockles (Clinocardium nuttallii), a species that is important to the culture and diet of the Suquamish Tribe as well as other tribes with traditional access to the species. To test whether disseminated neoplasia in cockles is a previously unknown lineage of BTN, a nuclear locus was amplified from cockles from Agate Pass, Washington, and sequences revealed evidence of transmissible cancer in several individuals. We used a combination of cytology and quantitative PCR to screen collections of cockles from 11 locations in Puget Sound and along the Washington coastline to identify the extent of contagious cancer spread in this species. Two BTN lineages were identified in these cockles, with one of those lineages (CnuBTN1) being the most prevalent and geographically widespread. Within the CnuBTN1 lineage, multiple nuclear loci support the conclusion that all cancer samples form a single clonal lineage. However, the mitochondrial alleles in each cockle with CnuBTN1 are different from each other, suggesting mitochondrial genomes of this cancer have been replaced multiple times during its evolution, through horizontal transmission. The identification and analysis of these BTNs are critical for broodstock selection, management practices, and repopulation of declining cockle populations, which will enable continued cultural connection and dietary use of the cockles by Coast Salish Tribes. 

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2. Establishing optimal broodstock sex ratios for the royal gramma (Gramma loreto) in small scale system aquaculture

   https://doi.org/10.1016/j.aquaculture.2021.736931  

   Vacco, V.; Camacho, C.; Guinovart, C.; Anderson, P. (May 2021, Aquaculture)

   The royal gramma (Gramma loreto) is vulnerable to anthropogenic impact in its coral reef habitats, and is deemed an “indicator” species of pollution. It is also heavily fished for the aquarium trade, being among the top 1% of imported marine aquarium fish species into the U.S. The objective of this study was to establish optimal sex ratios of broodstock groups for aquaculture as an alternative to wild capture, while balancing territorial aggression. Three two-month breeding trials were carried out in six 23 L aquaria stocked with one male and one, two, or three females. During the trials, each aquarium was filmed weekly for one hour at first light to record courtship, nest use, and aversive behaviors. Behaviors were quantified with JWatcher software and analyzed in repeated measures ANOVAs. Results suggest that in small aquaria, a sex ratio of one male to two females may be optimal for spawning because courtship and nest use behaviors are optimized while aversive behaviors are moderated. Past efforts to aquaculture the species have typically been conducted at broodstock sex ratios of 1:1. These results offer the potential to increase productivity of commercial aquaculture of the species. 

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3. Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound

   https://doi.org/10.1128/spectrum.01982-21  

   Kunselman, Emily; Minich, Jeremiah J.; Horwith, Micah; Gilbert, Jack A.; Allen, Eric E.; Green, Timothy (June 2022, Microbiology Spectrum)

   Kormas, Konstantinos Aristomenis (Ed.)

   ABSTRACT The Olympia oyster ( Ostrea lurida ) of the Puget Sound suffered a dramatic population crash, but restoration efforts hope to revive this native species. One overlooked variable in the process of assessing ecosystem health is association of bacteria with marine organisms and the environments they occupy. Oyster microbiomes are known to differ significantly between species, tissue type, and the habitat in which they are found. The goals of this study were to determine the impact of field site and habitat on the oyster microbiome and to identify core oyster-associated bacteria in the Puget Sound. Olympia oysters from one parental family were deployed at four sites in the Puget Sound both inside and outside of eelgrass ( Zostera marina ) beds. Using 16S rRNA gene amplicon sequencing of the oyster gut, shell, and surrounding seawater and sediment, we demonstrate that gut-associated bacteria are distinct from the surrounding environment and vary by field site. Furthermore, regional differences in the gut microbiota are associated with the survival rates of oysters at each site after 2 months of field exposure. However, habitat type had no influence on microbiome diversity. Further work is needed to identify the specific bacterial dynamics that are associated with oyster physiology and survival rates. IMPORTANCE This is the first exploration of the microbial colonizers of the Olympia oyster, a native oyster species to the West Coast, which is a focus of restoration efforts. The patterns of differential microbial colonization by location reveal microscale characteristics of potential restoration sites which are not typically considered. These microbial dynamics can provide a more holistic perspective on the factors that may influence oyster performance. 

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4. Inter- and intrapopulation resource use variation of marine subsidized western fence lizards

   https://doi.org/10.1007/s00442-023-05496-6  

   Ebersole, Alexi; Bunker, Marie E.; Weiss, Stacey L.; Fox-Dobbs, Kena (January 2024, Oecologia)

   Abstract Marine resource subsidies alter consumer dynamics of recipient populations in coastal systems. The response to these subsidies by generalist consumers is often not uniform, creating inter- and intrapopulation diet variation and niche diversification that may be intensified across heterogeneous landscapes. We sampled western fence lizards,Sceloporus occidentalis, from Puget Sound beaches and coastal and inland forest habitats, in addition to the lizards’ marine and terrestrial prey items to quantify marine and terrestrial resource use with stable isotope analysis and mixing models. Beach lizards had higher average δ¹³C and δ¹⁵N values compared to coastal and inland forest lizards, exhibiting a strong mixing line between marine and terrestrial prey items. Across five beach sites, lizard populations received 20–51% of their diet from marine resources, on average, with individual lizards ranging between 7 and 86% marine diet. The hillslope of the transition zone between marine and terrestrial environments at beach sites was positively associated with marine-based diets, as the steepest sloped beach sites had the highest percent marine diets. Within-beach variation in transition zone slope was positively correlated with the isotopic niche space of beach lizard populations. These results demonstrate that physiography of transitional landscapes can mediate resource flow between environments, and variable habitat topography promotes niche diversification within lizard populations. Marine resource subsidization of Puget Sound beachS. occidentalispopulations may facilitate occupation of the northwesternmost edge of the species range. Shoreline restoration and driftwood beach habitat conservation are important to support the unique ecology of Puget SoundS. occidentalis. 

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5. Population expansion, divergence, and persistence in Western Fence Lizards (Sceloporus occidentalis) at the northern extreme of their distributional range

   https://doi.org/10.1038/s41598-022-10233-9  

   Davis, Hayden R.; Des Roches, Simone; Anderson, Roger A.; Leaché, Adam D. (April 2022, Scientific Reports)

   Abstract Population dynamics within species at the edge of their distributional range, including the formation of genetic structure during range expansion, are difficult to study when they have had limited time to evolve. Western Fence Lizards (Sceloporus occidentalis) have a patchy distribution at the northern edge of their range around the Puget Sound, Washington, where they almost exclusively occur on imperiled coastal habitats. The entire region was covered by Pleistocene glaciation as recently as 16,000 years ago, suggesting that populations must have colonized these habitats relatively recently. We tested for population differentiation across this landscape using genome-wide SNPs and morphological data. A time-calibrated species tree supports the hypothesis of a post-glacial establishment and subsequent population expansion into the region. Despite a strong signal for fine-scale population genetic structure across the Puget Sound with as many as 8–10 distinct subpopulations supported by the SNP data, there is minimal evidence for morphological differentiation at this same spatiotemporal scale. Historical demographic analyses suggest that populations expanded and diverged across the region as the Cordilleran Ice Sheet receded. Population isolation, lack of dispersal corridors, and strict habitat requirements are the key drivers of population divergence in this system. These same factors may prove detrimental to the future persistence of populations as they cope with increasing shoreline development associated with urbanization. 

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