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1. Learning from Our Study Organisms about Sexual Selection: Lessons from the Ocellated Wrasse

   https://doi.org/10.1086/723109  

   Alonzo, Suzanne H. (March 2023, The American Naturalist)

   Sexual selection is a powerful force shaping not only the details but also the breadth of what we see in nature. Yet so much unexplained variation remains. Organisms often solve the “problem” of how to pass on their genes in ways that do not fit our current expectations. I argue here that integrating empirical surprises will push our understanding of sexual selection forward. Such “nonmodel” organisms (i.e., species that do not do what we think they should do) challenge us to think deeply, integrate puzzling results, question our assumptions, and consider the new (and arguably better) questions these unexpected patterns pose. In this article, I share how puzzling observations from my long-term research on the ocellated wrasse (Symphodus ocellatus) have shaped my understanding of sexual selection and suggested new questions about the interplay among sexual selection, plasticity, and social interactions. My general premise, however, is not that others should study these questions. Instead, I argue for a change in the culture of our field—to consider unexpected results a welcome opportunity to generate new questions and learn new things about sexual selection. Those of us in positions of power (e.g., as editors, reviewers, and authors) need to lead the way. 

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2. Adaptation Without Boundaries: Population Genomics in Marine Systems

   https://doi.org/https://doi.org/10.1007/13836_2018_32  

   Oleksiak, M. F. (January 2020, Population Genomics)

   From the surface, the world’s oceans appear vast and boundless. Ocean currents, which can transport marine organisms thousands of kilometers, coupled with species that spend some or all of their life in the pelagic zone, the open sea, highlight the potential for well-mixed, panmictic marine populations. Yet these ocean habitats do harbor boundaries. In this largely three-dimensional marine environment, gradients form boundaries. These gradients include temperature, salinity, and oxygen gradients. Ocean currents also form boundaries between neighboring water masses even as they can break through barriers by transporting organisms huge distances. With the advent of next-generation sequencing approaches, which allow us to easily generate a large number of genomic markers, we are in an unprecedented position to study the effects of these potential oceanic boundaries and can ask how often and when do locally adapted marine populations evolve. This knowledge will inform our understanding of how marine organisms respond to climate change and affect how we protect marine diversity. In this chapter I first discuss the major boundaries present in the marine environment and the implications they have for marine organisms. Next, I discuss the how genomic approaches are impacting our understanding of genetic connectivity, ocean fisheries, and local adaptation, including the potential for epigenetic adaptation. I conclude with considerations for marine conservation and management and future prospects. 

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3. Efficient and robust sequential decision making algorithms

   https://doi.org/10.1002/aaai.12186  

   Xu, Pan (September 2024, AI Magazine)

   Abstract Sequential decision‐making involves making informed decisions based on continuous interactions with a complex environment. This process is ubiquitous in various applications, including recommendation systems and clinical treatment design. My research has concentrated on addressing two pivotal challenges in sequential decision‐making: (1) How can we design algorithms that efficiently learn the optimal decision strategy with minimal interactions and limited sample data? (2) How can we ensure robustness in decision‐making algorithms when faced with distributional shifts due to environmental changes and the sim‐to‐real gap? This paper summarizes and expands upon the talk I presented at the AAAI 2024 New Faculty Highlights program, detailing how my research aims to tackle these challenges. 

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4. Of corpses, ghosts and mirages: biomechanical consequences of morphology depend on the environment

   https://doi.org/10.1242/jeb.245442  

   Koehl, M. A. (April 2023, Journal of Experimental Biology)

   ABSTRACT Organisms are subject to the laws of physics, so comparative biomechanics is a powerful approach for identifying basic principles that apply across taxa of how morphology affects performance of mechanical functions such as locomotion, feeding or resisting damage. Journal of Experimental Biology has been a leading journal for decades in publishing studies revealing such basic biomechanical principles. However, field studies of the physical environment, ecological interactions and life-history strategies of organisms reveal which aspects of their biomechanical performance are important to their success in different types of natural habitats, and thus enable us to design ecologically relevant laboratory experiments to understand biomechanical function. Because the fitness consequences of differences in morphology are affected by the biological and physical environment, biomechanics can be used to identify how physical constraints on the performance of organisms with different body plans in variable environments can affect evolution. I illustrate these points with examples from the literature that show how the biomechanical consequences of morphology depend on the ecology of the organisms. Knowledge of the temporal patterns of interactions of organisms with their physical and biological environments is essential for understanding their functional morphology as it changes during ontogeny, and it reveals constraints on their evolution. 

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5. Natural experiments and long-term monitoring are critical to understand and predict marine host–microbe ecology and evolution

   https://doi.org/10.1371/journal.pbio.3001322  

   Leray, Matthieu; Wilkins, Laetitia G.; Apprill, Amy; Bik, Holly M.; Clever, Friederike; Connolly, Sean R.; De León, Marina E.; Duffy, J. Emmett; Ezzat, Leïla; Gignoux-Wolfsohn, Sarah; et al (August 2021, PLOS Biology)

   null (Ed.)

   Marine multicellular organisms host a diverse collection of bacteria, archaea, microbial eukaryotes, and viruses that form their microbiome. Such host-associated microbes can significantly influence the host’s physiological capacities; however, the identity and functional role(s) of key members of the microbiome (“core microbiome”) in most marine hosts coexisting in natural settings remain obscure. Also unclear is how dynamic interactions between hosts and the immense standing pool of microbial genetic variation will affect marine ecosystems’ capacity to adjust to environmental changes. Here, we argue that significantly advancing our understanding of how host-associated microbes shape marine hosts’ plastic and adaptive responses to environmental change requires (i) recognizing that individual host–microbe systems do not exist in an ecological or evolutionary vacuum and (ii) expanding the field toward long-term, multidisciplinary research on entire communities of hosts and microbes. Natural experiments, such as time-calibrated geological events associated with well-characterized environmental gradients, provide unique ecological and evolutionary contexts to address this challenge. We focus here particularly on mutualistic interactions between hosts and microbes, but note that many of the same lessons and approaches would apply to other types of interactions. 

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