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1. Barcoding Biological Reactions with DNA‐Functionalized Vesicles

   https://doi.org/10.1002/anie.201911544  

   Peruzzi, Justin A.; Jacobs, Miranda L.; Vu, Timothy Q.; Wang, Kenneth S.; Kamat, Neha P. (October 2019, Angewandte Chemie International Edition)

   Abstract Targeted vesicle fusion is a promising approach to selectively control interactions between vesicle compartments and would enable the initiation of biological reactions in complex aqueous environments. Here, we explore how two features of vesicle membranes, DNA tethers and phase‐segregated membranes, promote fusion between specific vesicle populations. Membrane phase‐segregation provides an energetic driver for membrane fusion that increases the efficiency of DNA‐mediated fusion events. The orthogonality provided by DNA tethers allows us to direct fusion and delivery of DNA cargo to specific vesicle populations. Vesicle fusion between DNA‐tethered vesicles can be used to initiate in vitro protein expression to produce model soluble and membrane proteins. Engineering orthogonal fusion events between DNA‐tethered vesicles provides a new strategy to control the spatiotemporal dynamics of cell‐free reactions, expanding opportunities to engineer artificial cellular systems. 

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2. Rectification of confined soft vesicles containing active particles

   https://doi.org/10.1039/D2SM01407F  

   Gandikota, M. C.; Cacciuto, A. (January 2023, Soft Matter)

   The shape fluctuations of two dimensional flexible vesicles containing active Brownian particles can squeeze a vesicle through narrow openings. They enable vesicle rectification when placed within asymmetric confining channels (ratchetaxis). 

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3. Design principles for transporting vesicles with enclosed active particles ^(a)

   https://doi.org/10.1209/0295-5075/acfab9  

   Uplap, Sarvesh; Hagan, Michael F.; Baskaran, Aparna (September 2023, Europhysics Letters)

   Abstract We use coarse-grained molecular-dynamics simulations to study the motility of a 2D vesicle containing self-propelled rods, as a function of the vesicle bending rigidity and the number density, length, and activity of the enclosed rods. Above a threshold value of the rod length, distinct dynamical regimes emerge, including a dramatic enhancement of vesicle motility characterized by a highly persistent random walk. These regimes are determined by clustering of the rods within the vesicle; the maximum motility state arises when there is one long-lived polar cluster. We develop a scaling theory that predicts the dynamical regimes as a function of control parameters, and shows that feedback between activity and passive membrane forces govern the rod organization. These findings yield design principles for building self-propelled superstructures using independent active agents under deformable confinement. 

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4. Myosin XI, a model of its conserved role in plant cell tip growth

   https://doi.org/10.1042/BST20220783  

   Chocano-Coralla, Edward J; Vidali, Luis (April 2024, Biochemical Society Transactions)

   In eukaryotic cells, organelle and vesicle transport, positioning, and interactions play crucial roles in cytoplasmic organization and function. These processes are governed by intracellular trafficking mechanisms. At the core of that trafficking, the cytoskeleton and directional transport by motor proteins stand out as its key regulators. Plant cell tip growth is a well-studied example of cytoplasm organization by polarization. This polarization, essential for the cell's function, is driven by the cytoskeleton and its associated motors. This review will focus on myosin XI, a molecular motor critical for vesicle trafficking and polarized plant cell growth. We will center our discussion on recent data from the moss Physcomitrium patens and the liverwort Marchantia polymorpha. The biochemical properties and structure of myosin XI in various plant species are discussed, highlighting functional conservation across species. We further explore this conservation of myosin XI function in the process of vesicle transport in tip-growing cells. Existing evidence indicates that myosin XI actively organizes actin filaments in tip-growing cells by a mechanism based on vesicle clustering at their tips. A hypothetical model is presented to explain the essential function of myosin XI in polarized plant cell growth based on vesicle clustering at the tip. The review also provides insight into the in vivo localization and dynamics of myosin XI, emphasizing its role in cytosolic calcium regulation, which influences the polymerization of F-actin. Lastly, we touch upon the need for additional research to elucidate the regulation of myosin function. 

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5. Membrane-Binding Biomolecules Influence the Rate of Vesicle Exchange between Bacteria

   https://doi.org/10.1128/aem.01346-22  

   Tran, Frances; Gangan, Manasi S.; Weaver, Brian P.; Boedicker, James Q. (December 2022, Applied and Environmental Microbiology)

   Nikel, Pablo Ivan (Ed.)

   ABSTRACT The exchange of bacterial extracellular vesicles facilitates molecular exchange between cells, including the horizontal transfer of genetic material. Given the implications of such transfer events on cell physiology and adaptation, some bacterial cells have likely evolved mechanisms to regulate vesicle exchange. Past work has identified mechanisms that influence the formation of extracellular vesicles, including the production of small molecules that modulate membrane structure; however, whether these mechanisms also modulate vesicle uptake and have an overall impact on the rate of vesicle exchange is unknown. Here, we show that membrane-binding molecules produced by microbes influence both the formation and uptake of extracellular vesicles and have the overall impact of increasing the vesicle exchange rate within a bacterial coculture. In effect, production of compounds that increase vesicle exchange rates encourage gene exchange between neighboring cells. The ability of several membrane-binding compounds to increase vesicle exchange was demonstrated. Three of these compounds, nisin, colistin, and polymyxin B, are antimicrobial peptides added at sub-inhibitory concentrations. These results suggest that a potential function of exogenous compounds that bind to membranes may be the regulation of vesicle exchange between cells. IMPORTANCE The exchange of bacterial extracellular vesicles is one route of gene transfer between bacteria, although it was unclear if bacteria developed strategies to modulate the rate of gene transfer within vesicles. In eukaryotes, there are many examples of specialized molecules that have evolved to facilitate the production, loading, and uptake of vesicles. Recent work with bacteria has shown that some small molecules influence membrane curvature and induce vesicle formation. Here, we show that similar compounds facilitate vesicle uptake, thereby increasing the overall rate of vesicle exchange within bacterial populations. The addition of membrane-binding compounds, several of them antibiotics at subinhibitory concentrations, to a bacterial coculture increased the rate of horizontal gene transfer via vesicle exchange. 

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