More Like this

1. Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica

   https://doi.org/10.1128/msystems.01254-22  

   Lemoine, Nathan P.; Adams, Byron J.; Diaz, Melisa; Dragone, Nicholas B.; Franco, André L.; Fierer, Noah; Lyons, W. Berry; Hogg, Ian D.; Wall, Diana H. (February 2023, mSystems)

   Lurgi, Miguel (Ed.)

   ABSTRACT Microbial communities can be structured by both deterministic and stochastic processes, but the relative importance of these processes remains unknown. The ambiguity partly arises from an inability to disentangle soil microbial processes from confounding factors, such as aboveground plant communities or anthropogenic disturbance. In this study, we characterized the relative contributions of determinism and stochasticity to assembly processes of soil bacterial communities across a large environmental gradient of undisturbed Antarctic soils. We hypothesized that harsh soils would impose a strong environmental selection on microbial communities, whereas communities in benign soils would be structured largely by dispersal. Contrary to our expectations, dispersal was the dominant assembly mechanism across the entire soil environmental gradient, including benign environments. The microbial community composition reflects slowly changing soil conditions and dispersal limitation of isolated sites. Thus, stochastic processes, as opposed to deterministic, are primary drivers of soil ecosystem assembly across space at our study site. This is especially surprising given the strong environmental constraints on soil microorganisms in one of the harshest environments on the planet, suggesting that dispersal could be a driving force in microbial community assembly in soils worldwide. IMPORTANCE Because of their diversity and ubiquity, microbes provide an excellent means to tease apart how natural communities are structured. In general, ecologists believe that stochastic assembly processes, like random drift and dispersal, should dominate in benign environments while deterministic processes, like environmental filtering, should be prevalent in harsh environments. To help resolve this debate, we analyzed microbial community composition in pristine Antarctic soils devoid of human influence or plant communities for eons. Our results demonstrate that dispersal limitation is a surprisingly potent force of community limitation throughout all soil conditions. Thus, dispersal appears to be a driving force of microbial community assembly, even in the harshest of conditions. 

   more » « less
2. Using simulated wildland fire to assess microbial survival at multiple depths from biocrust and bare soils

   https://doi.org/10.3389/fmicb.2023.1123790  

   Palmer, Brianne; Pietrasiak, Nicole; Cobb, Polina; Lipson, David (March 2023, Frontiers in Microbiology)

   IntroductionSurface soil microbial communities are directly exposed to the heat from wildland fires. Due to this, the microbial community composition may be stratified within the soil profile with more heat tolerant microbes near the surface and less heat tolerant microbes, or mobile species found deeper in the soil. Biological soil crusts, biocrusts, are found on the soil surface and contain a diverse microbial community that is directly exposed to the heat from wildland fires. MethodsHere, we used a simulated fire mesocosm along with a culture-based approach and molecular characterization of microbial isolates to understand the stratification of biocrust and bare soil microbes after low severity (450°C) and high severity (600°C) fires. We cultured and sequenced microbial isolates from 2 to 6 cm depth from both fire types. ResultsThe isolates were stratified along the soil depth. Green algal isolates were less thermotolerant and found in the deeper depths (4–6 cm) and the control soils, while several cyanobacteria in Oscillatoriales, Synechococcales, and Nostocales were found at 2–3 cm depth for both fire temperatures. An Alphaproteobacteria isolate was common across several depths, both fire types, and both fire temperatures. Furthermore, we used RNA sequencing at three depths after the high severity fire and one control to determine what microbial community is active following a fire. The community was dominated by Gammaproteobacteria, however some Cyanobacteria ASVs were also present. DiscussionHere we show evidence of stratification of soil and biocrust microbes after a fire and provide evidence that these microbes are able to survive the heat from the fire by living just below the soil surface. This is a steppingstone for future work on the mechanisms of microbial survival after fire and the role of soil insulation in creating resilient communities. 

   more » « less
3. Evidence for Wildland Fire Smoke Transport of Microbes From Terrestrial Sources to the Atmosphere and Back

   https://doi.org/10.1029/2024JG008236  

   Bonfantine, Krista; Vuono, David C; Christner, Brent C; Moore, Rachel; Fox, Sam; Dean, Timothy; Betancourt, Doris; Watts, Adam; Kobziar, Leda N (September 2024, Journal of Geophysical Research: Biogeosciences)

   Abstract Smoke from wildland fires contains more diverse, viable microbes than typical ambient air, yet little is known about the sources and sinks of smoke‐borne microorganisms. Data from molecular‐based surveys suggest that smoke‐borne microorganisms originate from material associated with the vegetation and underlying soils that becomes aerosolized during combustion, however, the sources of microbes in smoke have not yet been experimentally assessed. To elucidate this link, we studied high‐intensity forest fires in the Fishlake National Forest, Utah, USA and applied source‐sink modeling to assemblages of 16S ribosomal RNA (rRNA) gene sequences recovered from samples of smoke, vegetation, and soil. Our results suggest that 70% of the bacterial taxa in smoke originated from the local aspen (Populus tremuloides) (33%) and soil (37%) communities. In comparison, 42% of bacteria in air sampled prior to the fires could be attributed to these terrestrial sources. When the bacterial assemblages in smoke were modeled as sources to the local communities, they contributed an average of 25% to the terrestrial sinks versus an estimated contribution of <4% from ambient air. Our results provide support for the role of wildland fire in bacterial dispersal and the working hypothesis that smoke is an environmental reservoir of microbes for receiving ecosystems. 

   more » « less
4. Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts

   https://doi.org/10.3389/fmicb.2021.619711  

   Seitz, Taylor J.; Schütte, Ursel M.; Drown, Devin M. (February 2021, Frontiers in Microbiology)

   Recent advances in climate research have discovered that permafrost is particularly vulnerable to the changes occurring in the atmosphere and climate, especially in Alaska where 85% of the land is underlain by mostly discontinuous permafrost. As permafrost thaws, research has shown that natural and anthropogenic soil disturbance causes microbial communities to undergo shifts in membership composition and biomass, as well as in functional diversity. Boreal forests are home to many plants that are integral to the subsistence diets of many Alaska Native communities. Yet, it is unclear how the observed shifts in soil microbes can affect above ground plant communities that are relied on as a major source of food. In this study, we tested the hypothesis that microbial communities associated with permafrost thaw affect plant productivity by growing five plant species found in Boreal forests and Tundra ecosystems, including low-bush cranberry and bog blueberry, with microbial communities from the active layer soils of a permafrost thaw gradient. We found that plant productivity was significantly affected by the microbial soil inoculants. Plants inoculated with communities from above thawing permafrost showed decreased productivity compared to plants inoculated with microbes from undisturbed soils. We used metagenomic sequencing to determine that microbial communities from disturbed soils above thawing permafrost differ in taxonomy from microbial communities in undisturbed soils above intact permafrost. The combination of these results indicates that a decrease in plant productivity can be linked to soil disturbance driven changes in microbial community membership and abundance. These data contribute to an understanding of how microbial communities can be affected by soil disturbance and climate change, and how those community shifts can further influence plant productivity in Boreal forests and more broadly, ecosystem health. 

   more » « less
5. Dispersal changes soil bacterial interactions with fungal wood decomposition

   https://doi.org/10.1038/s43705-023-00253-5  

   Wang, Cong; Smith, Gabriel Reuben; Gao, Cheng; Peay, Kabir G (December 2023, ISME Communications)

   Abstract Although microbes are the major agent of wood decomposition - a key component of the carbon cycle - the degree to which microbial community dynamics affect this process is unclear. One key knowledge gap is the extent to which stochastic variation in community assembly, e.g. due to historical contingency, can substantively affect decomposition rates. To close this knowledge gap, we manipulated the pool of microbes dispersing into laboratory microcosms using rainwater sampled across a transition zone between two vegetation types with distinct microbial communities. Because the laboratory microcosms were initially identical this allowed us to isolate the effect of changing microbial dispersal directly on community structure, biogeochemical cycles and wood decomposition. Dispersal significantly affected soil fungal and bacterial community composition and diversity, resulting in distinct patterns of soil nitrogen reduction and wood mass loss. Correlation analysis showed that the relationship among soil fungal and bacterial community, soil nitrogen reduction and wood mass loss were tightly connected. These results give empirical support to the notion that dispersal can structure the soil microbial community and through it ecosystem functions. Future biogeochemical models including the links between soil microbial community and wood decomposition may improve their precision in predicting wood decomposition. 

   more » « less