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1. Responses of Biocrust and Associated Soil Bacteria to Novel Climates Are Not Tightly Coupled

   https://doi.org/10.3389/fmicb.2022.821860  

   Antoninka, Anita; Chuckran, Peter F.; Mau, Rebecca L.; Slate, Mandy L.; Mishler, Brent D.; Oliver, Melvin J.; Coe, Kirsten K.; Stark, Llo R.; Fisher, Kirsten M.; Bowker, Matthew A. (April 2022, Frontiers in Microbiology)

   Climate change is expanding drylands even as land use practices degrade them. Representing ∼40% of Earth’s terrestrial surface, drylands rely on biological soil crusts (biocrusts) for key ecosystem functions including soil stability, biogeochemical cycling, and water capture. Understanding how biocrusts adapt to climate change is critical to understanding how dryland ecosystems will function with altered climate. We investigated the sensitivity of biocrusts to experimentally imposed novel climates to track changes in productivity and stability under both warming and cooling scenarios. We established three common gardens along an elevational-climate gradient on the Colorado Plateau. Mature biocrusts were collected from each site and reciprocally transplanted intact. Over 20 months we monitored visible species composition and cover, chlorophyll a, and the composition of soil bacterial communities using high throughput sequencing. We hypothesized that biocrusts replanted at their home site would show local preference, and biocrusts transplanted to novel environments would maintain higher cover and stability at elevations higher than their origin, compared to at elevations lower than their origin. We expected responses of the visible biocrust cover and soil bacterial components of the biocrust community to be coupled, with later successional taxa showing higher sensitivity to novel environments. Only high elevation sourced biocrusts maintained higher biocrust cover and community stability at their site of origin. Biocrusts from all sources had higher cover and stability in the high elevation garden. Later successional taxa decreased cover in low elevation gardens, suggesting successional reversal with warming. Visible community composition was influenced by both source and transplant environment. In contrast, soil bacterial community composition was not influenced by transplant environments but retained fidelity to the source. Thus, responses of the visible and soil bacterial components of the biocrust community were not coupled. Synthesis: Our results suggest biocrust communities are sensitive to climate change, and loss of species and function can be expected, while associated soil bacteria may be buffered against rapid change. 

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2. Landscape characteristics shape surface soil microbiomes in the Chihuahuan Desert

   https://doi.org/10.3389/fmicb.2023.1135800  

   Hansen, Frederick A.; James, Darren K.; Anderson, John P.; Meredith, Christy S.; Dominguez, Andrew J.; Pombubpa, Nuttapon; Stajich, Jason E.; Romero-Olivares, Adriana L.; Salley, Shawn W.; Pietrasiak, Nicole (June 2023, Frontiers in Microbiology)

   Introduction Soil microbial communities, including biological soil crust microbiomes, play key roles in water, carbon and nitrogen cycling, biological weathering, and other nutrient releasing processes of desert ecosystems. However, our knowledge of microbial distribution patterns and ecological drivers is still poor, especially so for the Chihuahuan Desert. Methods This project investigated the effects of trampling disturbance on surface soil microbiomes, explored community composition and structure, and related patterns to abiotic and biotic landscape characteristics within the Chihuahuan Desert biome. Composite soil samples were collected in disturbed and undisturbed areas of 15 long-term ecological research plots in the Jornada Basin, New Mexico. Microbial diversity of cross-domain microbial groups (total Bacteria, Cyanobacteria, Archaea, and Fungi) was obtained via DNA amplicon metabarcode sequencing. Sequence data were related to landscape characteristics including vegetation type, landforms, ecological site and state as well as soil properties including gravel content, soil texture, pH, and electrical conductivity. Results Filamentous Cyanobacteria dominated the photoautotrophic community while Proteobacteria and Actinobacteria dominated among the heterotrophic bacteria. Thaumarchaeota were the most abundant Archaea and drought adapted taxa in Dothideomycetes and Agaricomycetes were most abundant fungi in the soil surface microbiomes. Apart from richness within Archaea ( p  = 0.0124), disturbed samples did not differ from undisturbed samples with respect to alpha diversity and community composition ( p  ≥ 0.05), possibly due to a lack of frequent or impactful disturbance. Vegetation type and landform showed differences in richness of Bacteria, Archaea, and Cyanobacteria but not in Fungi. Richness lacked strong relationships with soil variables. Landscape features including parent material, vegetation type, landform type, and ecological sites and states, exhibited stronger influence on relative abundances and microbial community composition than on alpha diversity, especially for Cyanobacteria and Fungi. Soil texture, moisture, pH, electrical conductivity, lichen cover, and perennial plant biomass correlated strongly with microbial community gradients detected in NMDS ordinations. Discussion Our study provides first comprehensive insights into the relationships between landscape characteristics, associated soil properties, and cross-domain soil microbiomes in the Chihuahuan Desert. Our findings will inform land management and restoration efforts and aid in the understanding of processes such as desertification and state transitioning, which represent urgent ecological and economical challenges in drylands around the world. 

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3. Soil cover heterogeneity associated with biocrusts predicts patch-level plant diversity patterns

   https://doi.org/10.1007/s10980-024-01986-x  

   Havrilla, Caroline_A; Villarreal, Miguel_L (November 2024, Landscape Ecology)

   Abstract ContextSoil resource heterogeneity drives plant species diversity patterns at local and landscape scales. In drylands, biocrusts are patchily distributed and contribute to soil resource heterogeneity important for plant establishment and growth. Yet, we have a limited understanding of how such heterogeneity may relate to patterns of plant diversity and community structure. ObjectivesWe explored relationships between biocrust-associated soil cover heterogeneity and plant diversity patterns in a cool desert ecosystem. We asked: (1) does biocrust-associated soil cover heterogeneity predict plant diversity and community composition? and (2) can we use high-resolution remote sensing data to calculate soil cover heterogeneity metrics that could be used to extrapolate these patterns across landscapes? MethodsWe tested associations among field-based measures of plant diversity and soil cover heterogeneity. We then used a Support Vector Machine classification to map soil, plant and biocrust cover from sub-centimeter resolution Unoccupied Aerial System (UAS) imagery and compared the mapped results to field-based measures. ResultsField-based soil cover heterogeneity and biocrust cover were positively associated with plant diversity and predicted community composition. The accuracy of UAS-mapped soil cover classes varied across sites due to variation in timing and quality of image collections, but the overall results suggest that UAS are a promising data source for generating detailed, spatially explicit soil cover heterogeneity metrics. ConclusionsResults improve understanding of relationships between biocrust-associated soil cover heterogeneity and plant diversity and highlight the promise of high-resolution UAS data to extrapolate these patterns over larger landscapes which could improve conservation planning and predictions of dryland responses to soil degradation under global change. 

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4. Cover and frequency of biological soil crust community types, moss species, vascular plants, and abiotic land surface features, on gypsum & non-gypsum soils from the Chihuahuan and Mojave Deserts in 2023

   https://doi.org/10.6073/pasta/488c8b229fed3e872a57a9125986e5a8  

   Gobbie, Katelyn G; Drenovsky, Rebecca E; Pietrasiak, Nicole (January 2024, Environmental Data Initiative)

   This dataset contains raw and calculated percent cover and frequency data for biological soil crust (hereafter biocrust) functional groups, vascular plant functional groups, and abiotic land surface features on and off gypsum soils in the northern Chihuahuan and eastern Mojave Deserts. Abundance data were obtained from 20 study sites total, 10 located on soils derived from gypsum parent material and 10 located on soils derived from non-gypsum parent materials. Sites were grouped into 10 pairs, in which every gypsum site was partnered with a non-gypsum site located in the same region. Apart from soil type, partnered-site characteristics (topography, climate, elevation, slope, aspect, and presence of biocrusts) were held relatively constant. At each site, cover and frequency assessments were made using the line-point intercept method (LPI) and frequency quadrats (1.0 m^2), respectively. Biocrust functional groups included the following crusts: lichen, moss, incipient algal, light algal, dark algal, unknown photosynthetic crust, and vagrant cyanobacteria. Vascular plant categories included: perennial forbs, perennial graminoids, annual forbs, annual graminoids, subshrub, shrub, Yucca, and cacti. Abiotic land surface features included: woody litter, herbaceous litter, bare soil, rock, bedrock, and animal feces. Moss crusts identified within cover and frequency analyses were sampled, and classified to species level via microscopy. The resulting percent cover and frequency data was used to understand differences in biocrust and moss species abundance and diversity on and off gypsum soils; furthermore, how biocrust and moss species abundance was associated with the measured environmental variables. Soil physical and chemical data from this study can be accessed at knb-lter-jrn.210616002. This study and dataset are complete. 

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5. Positive interactions between an exotic invader and moss biocrusts vary across life stage and correspond with the effect of water pulses on soil nitrogen

   https://doi.org/10.1111/1365-2435.13831  

   Slate, Mandy L.; McLeod, Morgan Luce; Callaway, Ragan M. (June 2021, Functional Ecology)

   Abstract The size and frequency of resource pulses can affect plant interactions and increase the abundance of invasive species relative to native species. We examined resource pulses generated during the desiccation and rehydration of communities of native biological soil crust (biocrust)‐forming mosses, in the context of positive associations between biocrusts and the invasive forb,Centaurea stoebe.We surveyedCentaureaand biocrust cover and evaluated how interactions amongCentaurea, biocrusts and water pulses influenced plant biomass and soil nitrogen in a field experiment.Centaureaseedling and biocrust interactions were also compared in a greenhouse experiment to evaluate differences related to life stage.In field surveys,Centaureaand biocrusts were positively associated. Across water pulse treatments, biocrust biomass decreased whenCentaureawas removed, indicating thatCentaureafacilitated biocrusts. Biocrusts did not affect adultCentaureain the field, butCentaureaseedling biomass was greater when grown with biocrusts in the greenhouse. Water pulses did not affect plant biomass, but interactions betweenCentaureaand biocrusts corresponded with variation in the effect of water pulses on soil nitrogen which were not evident whenCentaureaor biocrusts were grown alone. Twenty‐four hours after large water pulses were added, soilwas nine times higher in plots where biocrusts andCentaureaco‐occurred compared with small water pulse plots. In these same plots, soiltended to be lower at the end of the experiment.These results highlight positive interactions between an invasive exotic forb and native moss biocrust. Water pulses influenced soil nitrogen availability when both plants co‐occurred, but did not affect plant biomass, suggesting that resource pulses and species interactions can interact to affect ecosystem processes. A freePlain Language Summarycan be found within the Supporting Information of this article. 

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