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1. Microbial succession in a marine sediment: Inferring interspecific microbial interactions with marine cable bacteria

   https://doi.org/10.1111/1462-2920.16230  

   Liau, Pinky; Kim, Carol; Saxton, Matthew_A; Malkin, Sairah_Y (October 2022, Environmental Microbiology)

   Abstract Cable bacteria are long, filamentous, multicellular bacteria that grow in marine sediments and couple sulfide oxidation to oxygen reduction over centimetre‐scale distances via long‐distance electron transport. Cable bacteria can strongly modify biogeochemical cycling and may affect microbial community networks. Here we examine interspecific interactions with marine cable bacteria (Ca. Electrothrix) by monitoring the succession of 16S rRNA amplicons (DNA and RNA) and cell abundance across depth and time, contrasting sediments with and without cable bacteria growth. In the oxic zone, cable bacteria activity was positively associated with abundant predatory bacteria (Bdellovibrionota, Myxococcota, Bradymonadales), indicating putative predation on cathodic cells. At suboxic depths, cable bacteria activity was positively associated with sulfate‐reducing and magnetotactic bacteria, consistent with cable bacteria functioning as ecosystem engineers that modify their local biogeochemical environment, benefitting certain microbes. Cable bacteria activity was negatively associated with chemoautotrophic sulfur‐oxidizing Gammaproteobacteria (Thiogranum,Sedimenticola) at oxic depths, suggesting competition, and positively correlated with these taxa at suboxic depths, suggesting syntrophy and/or facilitation. These observations are consistent with chemoautotrophic sulfur oxidizers benefitting from an oxidizing potential imparted by cable bacteria at suboxic depths, possibly by using cable bacteria as acceptors for electrons or electron equivalents, but by an as yet enigmatic mechanism. 

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2. Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease

   https://doi.org/10.3389/fmicb.2020.610009  

   Aquino, Citlalli A.; Besemer, Ryan M.; DeRito, Christopher M.; Kocian, Jan; Porter, Ian R.; Raimondi, Peter T.; Rede, Jordan E.; Schiebelhut, Lauren M.; Sparks, Jed P.; Wares, John P.; et al (January 2021, Frontiers in Microbiology)

   Sea star wasting (SSW) disease describes a condition affecting asteroids that resulted in significant Northeastern Pacific population decline following a mass mortality event in 2013. The etiology of SSW is unresolved. We hypothesized that SSW is a sequela of microbial organic matter remineralization near respiratory surfaces, one consequence of which may be limited O 2 availability at the animal-water interface. Microbial assemblages inhabiting tissues and at the asteroid-water interface bore signatures of copiotroph proliferation before SSW onset, followed by the appearance of putatively facultative and strictly anaerobic taxa at the time of lesion genesis and as animals died. SSW lesions were induced in Pisaster ochraceus by enrichment with a variety of organic matter (OM) sources. These results together illustrate that depleted O 2 conditions at the animal-water interface may be established by heterotrophic microbial activity in response to organic matter loading. SSW was also induced by modestly (∼39%) depleted O 2 conditions in aquaria, suggesting that small perturbations in dissolved O 2 may exacerbate the condition. SSW susceptibility between species was significantly and positively correlated with surface rugosity, a key determinant of diffusive boundary layer thickness. Tissues of SSW-affected individuals collected in 2013–2014 bore δ 15 N signatures reflecting anaerobic processes, which suggests that this phenomenon may have affected asteroids during mass mortality at the time. The impacts of enhanced microbial activity and subsequent O 2 diffusion limitation may be more pronounced under higher temperatures due to lower O 2 solubility, in more rugose asteroid species due to restricted hydrodynamic flow, and in larger specimens due to their lower surface area to volume ratios which affects diffusive respiratory potential. 

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3. Integrating microbiome science and evolutionary medicine into animal health and conservation

   https://doi.org/10.1111/brv.13030  

   Bornbusch, Sally L.; Power, Michael L.; Schulkin, Jay; Drea, Christine M.; Maslanka, Michael T.; Muletz‐Wolz, Carly R. (November 2023, Biological Reviews)

   ABSTRACT Microbiome science has provided groundbreaking insights into human and animal health. Similarly, evolutionary medicine – the incorporation of eco‐evolutionary concepts into primarily human medical theory and practice – is increasingly recognised for its novel perspectives on modern diseases. Studies of host–microbe relationships have been expanded beyond humans to include a wide range of animal taxa, adding new facets to our understanding of animal ecology, evolution, behaviour, and health. In this review, we propose that a broader application of evolutionary medicine, combined with microbiome science, can provide valuable and innovative perspectives on animal care and conservation. First, we draw on classic ecological principles, such as alternative stable states, to propose an eco‐evolutionary framework for understanding variation in animal microbiomes and their role in animal health and wellbeing. With a focus on mammalian gut microbiomes, we apply this framework to populations of animals under human care, with particular relevance to the many animal species that suffer diseases linked to gut microbial dysfunction (e.g. gut distress and infection, autoimmune disorders, obesity). We discuss diet and microbial landscapes (i.e. the microbes in the animal's external environment), as two factors that are (i) proposed to represent evolutionary mismatches for captive animals, (ii) linked to gut microbiome structure and function, and (iii) potentially best understood from an evolutionary medicine perspective. Keeping within our evolutionary framework, we highlight the potential benefits – and pitfalls – of modern microbial therapies, such as pre‐ and probiotics, faecal microbiota transplants, and microbial rewilding. We discuss the limited, yet growing, empirical evidence for the use of microbial therapies to modulate animal gut microbiomes beneficially. Interspersed throughout, we propose 12 actionable steps, grounded in evolutionary medicine, that can be applied to practical animal care and management. We encourage that these actionable steps be paired with integration of eco‐evolutionary perspectives into our definitions of appropriate animal care standards. The evolutionary perspectives proposed herein may be best appreciated when applied to the broad diversity of species under human care, rather than when solely focused on humans. We urge animal care professionals, veterinarians, nutritionists, scientists, and others to collaborate on these efforts, allowing for simultaneous care of animal patients and the generation of valuable empirical data. 

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4. Challenges and Opportunities Developing Mathematical Models of Shared Pathogens of Domestic and Wild Animals

   https://doi.org/10.3390/vetsci5040092  

   Huyvaert, Kathryn; Russell, Robin; Patyk, Kelly; Craft, Meggan; Cross, Paul; Garner, M.; Martin, Michael; Nol, Pauline; Walsh, Daniel (December 2018, Veterinary Sciences)

   null (Ed.)

   Diseases that affect both wild and domestic animals can be particularly difficult to prevent, predict, mitigate, and control. Such multi-host diseases can have devastating economic impacts on domestic animal producers and can present significant challenges to wildlife populations, particularly for populations of conservation concern. Few mathematical models exist that capture the complexities of these multi-host pathogens, yet the development of such models would allow us to estimate and compare the potential effectiveness of management actions for mitigating or suppressing disease in wildlife and/or livestock host populations. We conducted a workshop in March 2014 to identify the challenges associated with developing models of pathogen transmission across the wildlife-livestock interface. The development of mathematical models of pathogen transmission at this interface is hampered by the difficulties associated with describing the host-pathogen systems, including: (1) the identity of wildlife hosts, their distributions, and movement patterns; (2) the pathogen transmission pathways between wildlife and domestic animals; (3) the effects of the disease and concomitant mitigation efforts on wild and domestic animal populations; and (4) barriers to communication between sectors. To promote the development of mathematical models of transmission at this interface, we recommend further integration of modern quantitative techniques and improvement of communication among wildlife biologists, mathematical modelers, veterinary medicine professionals, producers, and other stakeholders concerned with the consequences of pathogen transmission at this important, yet poorly understood, interface. 

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5. Seasonal soil moisture thresholds inhibit bacterial activity and decomposition during drought in a tallgrass prairie

   https://doi.org/10.1111/oik.10201  

   Lemoine, Nathan P; Budny, Michelle L; Rose, Ethan; Lucas, Jane; Marshall, Christopher W (December 2023, Oikos)

   Soil moisture reductions during drought often inhibit soil microbial activity and inhibit decomposition rates by reducing microbial biomass or by altering microbial communities. Evidence suggests that soil water must drop below a critical threshold to inhibit microbial activity. Thus, it is likely that the seasonal timing of drought will determine the extent to which belowground processes are adversely impacted by drought. Specifically, the effects of drought might be minimal during cool, wet periods typical of late spring but dramatic during hot summer months with high evapotranspiration rates that lower soil moisture levels below the critical threshold. Here, we present results from a study designed to quantify the effect of drought on soil microbial abundance, community composition, and soil water diffusion across four months, and to then assess how drought impacts the microbial decomposition of leaf matter. We imposed a season‐long drought in a Wisconsin tallgrass prairie and measured soil moisture, bacterial composition and abundance, microbial respiration, and decomposition rates throughout the growing season. Bacterial communities varied considerably among dates, but drought did not affect either bacterial abundance or community composition. Microbial respiration declined significantly during periods of drought when soil pores likely became hydrologically isolated, ultimately reducing cumulative microbial respiration by 10%. The reduction in microbial activity in drought treatments caused a 50% decline in the decomposition of refractory material. Our study highlights that sublethal effects of drought on microbial communities, occurring only when soil moisture declined below a tolerance threshold, can have large impacts on microbial carbon release or decomposition, highlighting the need to incorporate such measures into future studies. 

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