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1. Belowground plant allocation regulates rice methane emissions from degraded peat soils

   https://doi.org/10.1038/s41598-024-64616-1  

   Sriskandarajah, Nijanthini; Wüst-Galley, Chloé; Heller, Sandra; Leifeld, Jens; Määttä, Tiia; Ouyang, Zutao; Runkle, Benjamin_R K; Schiedung, Marcus; Schmidt, Michael_W I; Tumber-Dávila, Shersingh Joseph; et al (December 2024, Scientific Reports)

   Abstract Carbon-rich peat soils have been drained and used extensively for agriculture throughout human history, leading to significant losses of their soil carbon. One solution for rewetting degraded peat is wet crop cultivation. Crops such as rice, which can grow in water-saturated conditions, could enable agricultural production to be maintained whilst reducing CO₂and N₂O emissions from peat. However, wet rice cultivation can release considerable methane (CH₄). Water table and soil management strategies may enhance rice yield and minimize CH₄emissions, but they also influence plant biomass allocation strategies. It remains unclear how water and soil management influences rice allocation strategies and how changing plant allocation and associated traits, particularly belowground, influence CH₄-related processes. We examined belowground biomass (BGB), aboveground biomass (AGB), belowground:aboveground ratio (BGB:ABG), and a range of root traits (root length, root diameter, root volume, root area, and specific root length) under different soil and water treatments; and evaluated plant trait linkages to CH₄. Rice (Oryza sativaL.) was grown for six months in field mesocosms under high (saturated) or low water table treatments, and in either degraded peat soil or degraded peat covered with mineral soil. We found that BGB and BGB:AGB were lowest in water saturated conditions where mineral soil had been added to the peat, and highest in low-water table peat soils. Furthermore, CH₄and BGB were positively related, with BGB explaining 60% of the variation in CH₄but only under low water table conditions. Our results suggest that a mix of low water table and mineral soil addition could minimize belowground plant allocation in rice, which could further lower CH₄likely because root-derived carbon is a key substrate for methanogenesis. Minimizing root allocation, in conjunction with water and soil management, could be explored as a strategy for lowering CH₄emissions from wet rice cultivation in degraded peatlands. 

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2. The Effects of Soil Depth on the Structure of Microbial Communities in Agricultural Soils in Iowa (United States)

   https://doi.org/10.1128/AEM.02673-20  

   Hao, Jingjie; Chai, Yen Ning; Lopes, Lucas Dantas; Ordóñez, Raziel A.; Wright, Emily E.; Archontoulis, Sotirios; Schachtman, Daniel P. (January 2021, Applied and Environmental Microbiology)

   Semrau, Jeremy D. (Ed.)

   ABSTRACT This study investigated the differences in microbial community abundance, composition, and diversity throughout the depth profiles in soils collected from corn and soybean fields in Iowa (United States) using 16S rRNA amplicon sequencing. The results revealed decreased richness and diversity in microbial communities at increasing soil depth. Soil microbial community composition differed due to crop type only in the top 60 cm and due to location only in the top 90 cm. While the relative abundance of most phyla decreased in deep soils, the relative abundance of the phylum Proteobacteria increased and dominated agricultural soils below the depth of 90 cm. Although soil depth was the most important factor shaping microbial communities, edaphic factors, including soil organic matter, soil bulk density, and the length of time that deep soils were saturated with water, were all significant factors explaining the variation in soil microbial community composition. Soil organic matter showed the highest correlation with the exponential decrease in bacterial abundance with depth. A greater understanding of how soil depth influences the diversity and composition of soil microbial communities is vital for guiding sampling approaches in agricultural soils where plant roots extend beyond the upper soil profile. In the long term, a greater knowledge of the influence of depth on microbial communities should contribute to new strategies that enhance the sustainability of soil, which is a precious resource for food security. IMPORTANCE Determining how microbial properties change across different soils and within the soil depth profile will be potentially beneficial to understanding the long-term processes that are involved in the health of agricultural ecosystems. Most literature on soil microbes has been restricted to the easily accessible surface soils. However, deep soils are important in soil formation, carbon sequestration, and providing nutrients and water for plants. In the most productive agricultural systems in the United States where soybean and corn are grown, crop plant roots extend into the deeper regions of soils (>100 cm), but little is known about the taxonomic diversity or the factors that shape deep-soil microbial communities. The findings reported here highlight the importance of soil depth in shaping microbial communities, provide new information about edaphic factors that influence the deep-soil communities, and reveal more detailed information on taxa that exist in deep agricultural soils. 

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3. Black mangrove growth and root architecture in recycled glass sand: testing a new substrate for coastal restoration

   https://doi.org/10.1111/rec.70138  

   Fronabarger, Kathryn H; Deogracias, Alan J; Lange, Kacey; MacDougal, Elizabeth H; Markel, Bek_X L; Van_Bael, Sunshine A; Farrer, Emily C (July 2025, Restoration Ecology)

   As coastal regions experience accelerating land loss, artificial substrates may be useful in restoration efforts to replenish sediment and facilitate plant colonization. Recycled glass sand is a potential artificial substrate for marsh building due to its sustainability, availability, and similarity to natural substrates. However, differences in texture and availability of microbiota necessitate investigating how it affects plant growth. We tested the effect of three substrates (conventionally used dredged river sand, recycled glass sand, and a mix) and inoculation with natural soil microbes on the biomass and root architecture of Black mangrove (Avicennia germinans) in a greenhouse experiment. We found neither substrate nor inoculum affected biomass; however, survival was lower in mixed substrate compared to dredged and glass sand, and live inoculum increased survival from 70 to 93%. Substrate affected root architecture: mangroves grown in glass sand had 55% lower fine root length, 51% lower specific root length (length/mass), and 26% larger average root diameter than mangroves grown in dredged sand. Although an unintended fungal infection byGeotrichum candidumkilled nearly 90% of infected propagules before the experiment, surviving plants had 81% higher biomass than uninfected plants. These findings suggest that while glass sand does not affect biomass, it may affect root architecture in ways that compromise soil stability. Furthermore, inoculation with live soil may boost restoration planting success across substrates, likely by reintroducing mutualists. Overall, recycled glass sand may be a viable restoration strategy with the caveat that the developing root architecture may differ from that in more natural substrates. 

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4. Life cycle greenhouse gas emissions for irrigated corn production in the U.S. great plains

   https://doi.org/10.1016/j.envc.2023.100750  

   Koushki, Raana; Sharma, Sumit; Warren, Jason; Foltz, Mary E. (December 2023, Environmental Challenges)

   Agricultural management practices improve crop yields to satisfy food demand of the growing population. However, these activities can have negative consequences, including the release of greenhouse gas (GHG) emissions that contribute to global climate change. To mitigate this global environmental problem, the management practices that contribute the most to system GHG emissions should be identified and targeted to mitigate emissions. Accordingly, we estimated the cradle-to-product GHG emissions of irrigated corn production under various farmer-selected scenarios at an experimental testing field in the semi-arid U.S. Great Plains. We applied a carbon footprint approach to quantify life cycle GHG emissions associated with pre-field (e.g., energy production, fertilizer production) and in-field (e.g., groundwater pumping, fertilizer application) activities within fourteen scenarios in the 2020 Oklahoma Testing Ag Performance Solutions (TAPS) sprinkler corn competition. We determined that 63% of the total GHG emission from corn production was associated with in- field activities and that agricultural soil emissions were the overall driving factor. Soil biochemical processes within agricultural soils were expected to contribute an average of 89 ± 18 g CO2-eq kg− 1 corn of the total 271 ± 46 g CO2-eq kg− 1 corn estimated from these systems. On-site natural gas combustion for agricultural groundwater pumping, pre-field fertilizer production, and pre-field energy production for groundwater pumping were the next most influential parameters on total GHG emissions. Diesel fuel, seed, and herbicide production had insignificant contributions to total GHG emissions from corn production. The model was most sensitive to the modeled GHG emissions from agricultural soil, which had significant uncertainty in the emission factor. Therefore, future efforts should target field measurements to better predict the contribution of direct soil emissions to total GHG emissions, particularly under different managements. In addition, identifying the optimal application rate of irrigation water and fertilizer will help to decrease GHG emissions from groundwater irrigated crops. 

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5. Microbial community response to drought depends on crop

   https://doi.org/10.1525/elementa.2021.00110  

   Jones, Jennifer Marie; Boehm, Emma Lauren; Kahmark, Kevin; Lau, Jennifer; Evans, Sarah (January 2022, Elementa: Science of the Anthropocene)

   Growing season drought can be devastating to crop yields. Soil microbial communities have the potential to buffer yield loss under drought through increasing plant drought tolerance and soil water retention. Microbial inoculation on agricultural fields has been shown to increase plant growth, but few studies have examined the impact of microbial inoculation on plant and soil microbial drought tolerance. We conducted a rainout shelter experiment and subsequent greenhouse experiment to explore 3 objectives. First, we evaluated the performance of a large rainout shelter design for studying drought in agricultural fields. Second, we tested how crop (corn vs. soybean) and microbial inoculation alter the response of soil microbial composition, diversity, and biomass to drought. Third, we tested whether field inoculation treatments and drought exposure altered microbial communities in ways that promote plant drought tolerance in future generations. In our field experiment, the effects of drought on soil bacterial composition depended on crop type, while drought decreased bacterial diversity in corn plots and drought decreased microbial biomass carbon in soybean plots. Microbial inoculation did not alter overall microbial community composition, plant growth, or drought tolerance despite our efforts to address common barriers to inoculation success. Still, a history of inoculation affected growth of future plant generations in the greenhouse. Our study demonstrates the importance of plant species in shaping microbial community responses to drought and the importance of legacy effects of microbial inoculation. 

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