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1. Lateral, Vertical, and Temporal Variability of Seawater Carbonate Chemistry at Hog Reef, Bermuda

   https://doi.org/10.3389/fmars.2021.562267  

   Pezner, Ariel K.; Courtney, Travis A.; Page, Heather N.; Giddings, Sarah N.; Beatty, Cory M.; DeGrandpre, Michael D.; Andersson, Andreas J. (February 2021, Frontiers in Marine Science)

   null (Ed.)

   Spatial and temporal carbonate chemistry variability on coral reefs is influenced by a combination of seawater hydrodynamics, geomorphology, and biogeochemical processes, though their relative influence varies by site. It is often assumed that the water column above most reefs is well-mixed with small to no gradients outside of the benthic boundary layer. However, few studies to date have explored the processes and properties controlling these multi-dimensional gradients. Here, we investigated the lateral, vertical, and temporal variability of seawater carbonate chemistry on a Bermudan rim reef using a combination of spatial seawater chemistry surveys and autonomous in situ sensors. Instruments were deployed at Hog Reef measuring current flow, seawater temperature, salinity, pH T , p CO 2 , dissolved oxygen (DO), and total alkalinity (TA) on the benthos, and temperature, salinity, DO, and p CO 2 at the surface. Water samples from spatial surveys were collected from surface and bottom depths at 13 stations covering ∼3 km 2 across 4 days. High frequency temporal variability in carbonate chemistry was driven by a combination of diel light and mixed semi-diurnal tidal cycles on the reef. Daytime gradients in DO between the surface and the benthos suggested significant water column production contributing to distinct diel trends in pH T , p CO 2 , and DO, but not TA. We hypothesize these differences reflect the differential effect of biogeochemical processes important in both the water column and benthos (organic carbon production/respiration) vs. processes mainly occurring on the benthos (calcium carbonate production/dissolution). Locally at Hog Reef, the relative magnitude of the diel variability of organic carbon production/respiration was 1.4–4.6 times larger than that of calcium carbonate production/dissolution, though estimates of net organic carbon production and calcification based on inshore-offshore chemical gradients revealed net heterotrophy (−118 ± 51 mmol m –2 day –1 ) and net calcification (150 ± 37 mmol CaCO 3 m –2 day –1 ). These results reflect the important roles of time and space in assessing reef biogeochemical processes. The spatial variability in carbonate chemistry parameters was larger laterally than vertically and was generally observed in conjunction with depth gradients, but varied between sampling events, depending on time of day and modifications due to current flow. 

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2. Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation

   https://doi.org/10.1038/s42003-023-05730-0  

   Sparagon, Wesley J.; Arts, Milou G. I.; Quinlan, Zachary A.; Wegley Kelly, Linda; Koester, Irina; Comstock, Jacqueline; Bullington, Jessica A.; Carlson, Craig A.; Dorrestein, Pieter C.; Aluwihare, Lihini I.; et al (February 2024, Communications Biology)

   Abstract Coral bleaching is a well-documented and increasingly widespread phenomenon in reefs across the globe, yet there has been relatively little research on the implications for reef water column microbiology and biogeochemistry. A mesocosm heating experiment and bottle incubation compared how unbleached and bleached corals alter dissolved organic matter (DOM) exudation in response to thermal stress and subsequent effects on microbial growth and community structure in the water column. Thermal stress of healthy corals tripled DOM flux relative to ambient corals. DOM exudates from stressed corals (heated and/or previously bleached) were compositionally distinct from healthy corals and significantly increased growth of bacterioplankton, enriching copiotrophs and putative pathogens. Together these results demonstrate how the impacts of both short-term thermal stress and long-term bleaching may extend into the water column, with altered coral DOM exudation driving microbial feedbacks that influence how coral reefs respond to and recover from mass bleaching events. 

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3. Intrinsic and extrinsic drivers of organic matter processing along phosphorus and salinity gradients in coastal wetlands

   https://doi.org/10.1111/1365-2745.14302  

   Anderson, Kenneth J.; Kominoski, John S.; Sah, Jay P. (March 2024, Journal of Ecology)

   Abstract Climate change is accelerating sea‐level rise and saltwater intrusion in coastal regions world‐wide and interacting with large‐scale changes in species composition in coastal wetlands. Quantifying macrophyte litter breakdown along freshwater‐to‐marine coastal gradients is needed to predict how carbon stores will respond to shifts in both macrophyte communities and water chemistry under changing environmental conditions.To test the interactive drivers of changing species identity and water chemistry, we performed a reciprocal transplant of four macrophyte litter species in seven sites along freshwater‐to‐marine gradients in the Florida Coastal Everglades. We measured surface water chemistry (dissolved organic carbon, total nitrogen and total phosphorus), litter chemistry (% nitrogen, % phosphorus, change in N:P molar ratio, % cellulose and % lignin as proxies for recalcitrance) and litter breakdown rates (k/degree‐day).Direct effects of salinity and surface water nutrients were the strongest drivers ofk, but unexpectedly, litter chemistry did not correlate with litterk. However, salinity strongly correlated with changes in litter chemistry, whereby litter incubated in brackish and marine wetlands was more labile and gained more phosphorus compared with litter in freshwater marshes. Our results suggest that litterkin coastal wetlands is explained by species‐specific interactions among water and litter chemistries. Water nutrient availability was an important predictor of breakdown rates across species, but breakdown rates were only explained by the carbon recalcitrance of litter in the species with the slowest breakdown (Cladium jamaicense), indicating the importance of carbon structure, and species identity on breakdown rates.Synthesis. In oligotrophic ecosystems, nutrients are often the primary driver of organic matter breakdown. However, we found that variation in macrophyte breakdown rates in oligotrophic coastal wetlands was also explained by salinity and associated seawater chemistry, emphasising the need to understand how saltwater intrusion will alter organic matter processing in wetlands. Our results suggest that marine subsidies associated with sea‐level rise have the potential to accelerate leaf litter breakdown. The increase in breakdown rates could either be buffered or increase further as sea‐level rise also shifts macrophyte community composition to more or less recalcitrant species. 

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4. Impact of Peat Extraction on Downstream Concentrations and Attenuation of Dissolved Organic Carbon and Nutrients

   https://doi.org/10.1029/2024WR037397  

   Frei, Rebecca_J; Shewan, Renae; Cao, Ming; Abbott, Benjamin_W; Olefeldt, David (August 2024, Water Resources Research)

   Abstract Horticultural peat extraction can mobilize dissolved organic matter (DOM) and inorganic nutrients (nitrogen and phosphorous) to surface waters, harming aquatic ecosystems and water quality. However, it is uncertain how peat extraction affects solute concentration across hydrological and seasonal conditions and how biogeochemical processing in downstream drainage networks responds. Over two years, we used repeated, spatially extensive sampling in stream networks of two mixed land‐use catchments (<200 km²) on the subhumid interior plains of western Canada. We used random forest models to disentangle the effects of land cover, hydrology, and temperature on water chemistry. Peatlands were the dominant source of DOM to streams, but we detected no substantial effect of peat extraction on DOM concentration or composition. Stream discharge was the most important predictor of DOM composition, with generally humic‐like DOM becoming fresher during snowmelt and summer base flow. We detected no effect from peat extraction on soluble reactive phosphorous (SRP) or nitrate (NO₃⁻). However, total ammonia nitrogen (TAN) was an order of magnitude higher in subcatchments with >40% extracted peatland cover (median: 1.5 mg TAN L⁻¹) compared to catchments with similar intact peatland cover. Mass balance analysis suggested that DOM and inorganic nutrients synchronously attenuated during low flows. During high flows, DOM and inorganic nitrogen were conservatively transported, while SRP was attenuated, likely sorbing to suspended particles. Our study suggests that excess TAN mobilized by peat extraction is utilized in headwaters during low flow but propagates downstream during high flow, with implications for eutrophication that land managers should consider. 

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5. Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals

   https://doi.org/10.1073/pnas.2110283119  

   Wegley Kelly, Linda; Nelson, Craig E.; Petras, Daniel; Koester, Irina; Quinlan, Zachary A.; Arts, Milou G.I.; Nothias, Louis-Felix; Comstock, Jacqueline; White, Brandie M.; Hopmans, Ellen C.; et al (February 2022, Proceedings of the National Academy of Sciences)

   Metabolites exuded by primary producers comprise a significant fraction of marine dissolved organic matter, a poorly characterized, heterogenous mixture that dictates microbial metabolism and biogeochemical cycling. We present a foundational untargeted molecular analysis of exudates released by coral reef primary producers using liquid chromatography–tandem mass spectrometry to examine compounds produced by two coral species and three types of algae (macroalgae, turfing microalgae, and crustose coralline algae [CCA]) from Mo’orea, French Polynesia. Of 10,568 distinct ion features recovered from reef and mesocosm waters, 1,667 were exuded by producers; the majority (86%) were organism specific, reflecting a clear divide between coral and algal exometabolomes. These data allowed us to examine two tenets of coral reef ecology at the molecular level. First, stoichiometric analyses show a significantly reduced nominal carbon oxidation state of algal exometabolites than coral exometabolites, illustrating one ecological mechanism by which algal phase shifts engender fundamental changes in the biogeochemistry of reef biomes. Second, coral and algal exometabolomes were differentially enriched in organic macronutrients, revealing a mechanism for reef nutrient-recycling. Coral exometabolomes were enriched in diverse sources of nitrogen and phosphorus, including tyrosine derivatives, oleoyl-taurines, and acyl carnitines. Exometabolites of CCA and turf algae were significantly enriched in nitrogen with distinct signals from polyketide macrolactams and alkaloids, respectively. Macroalgal exometabolomes were dominated by nonnitrogenous compounds, including diverse prenol lipids and steroids. This study provides molecular-level insights into biogeochemical cycling on coral reefs and illustrates how changing benthic cover on reefs influences reef water chemistry with implications for microbial metabolism. 

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