An official website of the United States government
Abstract BackgroundThe target trial framework was developed as a strategy to design and analyze observational epidemiologic studies with the aim of reducing bias due to analytic decisions. It involves designing a hypothetical randomized trial to answer a question of interest and systematically considering how to use observational data to emulate each trial component. AimsThe primary aim of this paper is to provide a detailed example of the application of the target trial framework to a research question in oral epidemiology. Materials and MethodsWe describe the development of a hypothetical target trial and emulation protocol to evaluate the effect of preconception periodontitis treatment on time‐to‐pregnancy. We leverage data from Pregnancy Study Online (PRESTO), a preconception cohort, to ground our example in existing observational data. We discuss the decision‐making process for each trial component, as well as limitations encountered. ResultsOur target trial application revealed data limitations that precluded us from carrying out the proposed emulation. Implications for data quality are discussed and we provide recommendations for researchers interested in conducting trial emulations in the field of oral epidemiology. DiscussionThe target trial framework has the potential to improve the validity of observational research in oral health, when properly applied. ConclusionWe encourage the broad adoption of the target trial framework to the field of observational oral health research and demonstrate its value as a tool to identify directions for future research.
more »
« less
Some results and problems on clique coverings of hypergraphs
Abstract For a ‐uniform hypergraph we consider the parameter , the minimum size of a clique cover of the edge set of . We derive bounds on for belonging to various classes of hypergraphs.
more »
« less
- Award ID(s):
- 2300347
- PAR ID:
- 10584372
- Publisher / Repository:
- Wiley
- Date Published:
- Journal Name:
- Journal of Graph Theory
- Volume:
- 107
- Issue:
- 2
- ISSN:
- 0364-9024
- Page Range / eLocation ID:
- 442 to 457
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract AimWe studied the niche evolution and diversification modes in transisthmianAlpheusshrimps by examining the interplay between environmental niche divergence and conservatism in allopatric sister species. In a broader perspective, the current study analysed the evolution of climatic niche and the role of the environment in species diversification ofAlpheustransisthmian shrimp. LocationAtlantic and Eastern‐Pacific oceans. TaxonAlpheusshrimps (Caridea: Alpheidae). MethodsWe assembled georeferenced occurrences for 33 species ofAlpheus(with 24 sister species) from a time‐calibrated molecular phylogeny. We modelled their ecological niches and assessed niche overlap through pairwise comparisons. Additionally, we performed phylogenetic reconstructions of the ancestral environmental niche, for each niche axis. ResultsOur results demonstrate that thermal tolerances, food availability and hydrodynamic forces were relevant environmental axes in evolutionary processes in transisthmian species ofAlpheus. Among the 528 paired comparisons, we found that most niches were divergent, including in 12 clades formed by pairs of sister species (in only two of these clades were the niches fully equivalent). Phylogenetic reconstructions of ancestral niches showed an initial niche conservatism in all axes, with divergences intensifying in the last 12 million years. Main ConclusionsWe found evidence that confirms the relevance of the environmental changes that occurred in the West Atlantic and East Pacific for niche evolution in transisthmianAlpheusspecies, as well as for the emergence of some lineages. Our findings provide evidence for different modes ofAlpheusspecies speciation in a period consistent with the closure of the Isthmus of Panama.more » « less
-
Abstract AimUnderstanding the mechanisms promoting resilience in plant communities is crucial in times of increasing disturbance and global environmental change. Here, we present the first meta‐analysis evaluating the relationship between functional diversity and resilience of plant communities. Specifically, we tested whether the resilience of plant communities is positively correlated with interspecific trait variation (following the niche complementarity hypothesis) and the dominance of acquisitive and small‐size species (following the mass ratio hypothesis), and for the context‐dependent effects of ecological and methodological differences across studies. LocationGlobal. Time Period2004–2021. Major Taxa StudiedVascular plants. MethodsWe compiled a dataset of 69 independent sites from 26 studies that have quantified resilience. For each site, we calculated functional diversity indices based on the floristic composition and functional traits of the plant community (obtained from the TRY database) which we correlated with resilience of biomass and floristic composition. After transforming correlation coefficients to Fisher'sZ‐scores, we conducted a hierarchical meta‐analysis, using a multilevel random‐effects model that accounted for the non‐independence of multiple effect sizes and the effects of ecological and methodological moderators. ResultsIn general, we found no positive functional diversity–resilience relationships of grand mean effect sizes. In contrast to our expectations, we encountered a negative relationship between resilience and trait variety, especially in woody ecosystems, whereas there was a positive relationship between resilience and the dominance of acquisitive species in herbaceous ecosystems. Finally, the functional diversity–resilience relationships were strongly affected by both ecological (biome and disturbance properties) and methodological (temporal scale, study design and resilience metric) characteristics. Main ConclusionsWe rejected our hypothesis of a general positive functional diversity–resilience relationship. In addition to strong context dependency, we propose that idiosyncratic effects of single resident species present in the communities before the disturbances and biological legacies could play major roles in the resilience of terrestrial plant communities.more » « less
-
Abstract AimQuantifying the phylogenetic diversity of temperate trees is essential for understanding the processes that have shaped the modern distribution of temperate broadleaf forest and other major forest biomes. Here, we focus on Fagales, an iconic member of forests worldwide, to uncover global diversity and endemism patterns and investigate the distribution of root nodule symbiosis (RNS), an important morphological specialisation in this clade, as a key factor behind these patterns. LocationGlobal. TaxonFagales. MethodsWe combined phylogenetic data covering 60.2% of living species, fine‐scale distribution models covering 90% of species, and nodulation data covering all species to investigate the distribution of species richness and phylogenetic diversity at fine spatial scales compared to the distribution of RNS. We identify abiotic environmental factors associated with RNS and with Fagales diversity in general. ResultsWe find the highest species richness in temperate east Asia, eastern North America, and equatorial montane regions of Asia and Central America. By contrast, relative phylogenetic diversity (RPD) is highest at higher latitudes, where RNS also predominates. We found a strong spatial structuring of regionalisations of Fagales floras, reflecting distinct Northern and Southern Hemisphere floras (except a unique Afro‐Boreal region), each with distinct RNS‐environment relationships. Main ConclusionsAlthough species richness and phylogenetic regionalisation for Fagales accord well with traditional biogeographic concepts for temperate forests, this is not the case for RPD. RNS is almost universal in the highest RPD regions, which may reflect ecological filtering promoting RNS in these regions. Our results highlight the utility of global‐scale, clade‐specific spatial phylogenetics and its utility for understanding drivers of diversity in species‐rich clades.more » « less
-
Abstract AimThe latitudinal diversity gradient of increasing species richness from poles to equator is one of the most striking and pervasive spatial patterns of biodiversity. Climate appears to have been key to the formation of the latitudinal diversity gradient, but the processes through which climate shaped species richness remain unclear. We tested predictions of the time for speciation, carrying capacity and diversification rate latitudinal diversity gradient hypotheses in a trans‐marine/freshwater clade of fishes. LocationGlobal in marine and freshwater environments. TaxonClupeiformes (anchovies, herrings, sardines and relatives). MethodsWe tested predictions of latitudinal diversity gradient hypotheses using a molecular phylogeny, species distribution data and phylogenetic comparative approaches. To test the time for speciation hypothesis, we conducted ancestral state reconstructions to infer the ages of temperate, subtropical and tropical lineages and frequency of evolutionary transitions between climates. We tested the carry capacity hypothesis by characterizing changes in net diversification rates through time. To test the diversification rate hypothesis, we qualitatively compared the diversification rates of temperate, subtropical and tropical lineages and conducted statistical tests for associations between latitude and diversification rates. ResultsWe identified four transitions to temperate climates and two transitions out of temperate climates. We found no differences in diversification rates among temperate and tropical clupeiforms. Net diversification rates remained positive in crown Clupeiformes since their origin ~150 Ma in both tropical and temperate lineages. Climate niche characters exhibited strong phylogenetic signal. All temperate clupeiform lineages arose <50 Ma, after the Early Eocene Climatic Optimum. Main conclusionsOur results support the time for speciation hypothesis, which proposes that climate niche conservatism and fluctuations in the extent of temperate climates limited the time for species to accumulate in temperate climates, resulting in the latitudinal diversity gradient. We found no support for the carrying capacity or diversification rate hypotheses.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1002/jgt.23111
