Pachyphlodes is a lineage of ectomycorrhizal, hypogeous, sequestrate ascomycete fungi native to temperate and subtropical forests in the Northern Hemisphere. Pachyphlodes species form ectomycorrhizae mainly with Fagales hosts. Here we describe two new species of Pachyphlodes , P. brunnea , and P. coalescens , based on morphological and phylogenetic analysis. Pachyphlodes brunnea is distributed in the states of Tamaulipas and Nuevo León in northern México, occurring with Quercus and Juglans species. It is characterized by its dark brown peridium, white gleba, and spores with capitate columns. Pachyphlodes coalescens is distributed in the states of Michoacán and Tlaxcala in central and southwestern México co-occurring with Quercus and is distinguished by its reddish-brown peridium, light yellow gleba, and spore ornamentation. Both species, along with P. marronina , constitute the Marronina clade. This clade contains North American species characterized by a brown peridium and spores ornamented with capitate spines to coalesced spine tips that form a partial perispore. 
                        more » 
                        « less   
                    
                            
                            Rugosporella, a new genus to accommodate the North American species Peziza atrovinosa (Pezizaceae) and its predicted ectomycorrhizal status
                        
                    
    
            The genus Rugosporella is proposed to accommodate Peziza atrovinosa in the modern classification scheme of the Pezizaceae. We used DNA sequences of ITS, LSU and RPB2 to resolve the phylogenetic placement of this taxon. The species occupies a distinct position within a large and diverse clade of hypogeous and epigeous taxa, all of which are either known to be or presumed to be ectomycorrhizal. Although no DNA sequences of this species have been identified from ectomycorrhizal roots, we provide isotopic data supporting its ectomycorrhizal lifestyle. Peziza atrovinosa is distinctive in its moderately large vinaceous brown apothecia with thick flesh and the relatively small ascospores that are ornamented with a high reticulum and that become yellow-brown at maturity. This species is found across eastern North America. 
        more » 
        « less   
        
    
                            - Award ID(s):
- 1946445
- PAR ID:
- 10585111
- Publisher / Repository:
- Ascomycete.org
- Date Published:
- Journal Name:
- Ascomyceteorg
- Volume:
- 16
- Issue:
- 3
- ISSN:
- 2102-4995
- Page Range / eLocation ID:
- 185-196
- Subject(s) / Keyword(s):
- Pezizales Pezizaceae Rugosporella
- Format(s):
- Medium: X Size: 3458 kB Other: PDF
- Size(s):
- 3458 kB
- Right(s):
- Creative Commons BY-NC-ND 3.0 FR
- Sponsoring Org:
- National Science Foundation
More Like this
- 
            
- 
            The functioning of mycorrhizal symbioses is tied to soil nutrient status, suggesting that nutrient availability should influence the reproduction of mycorrhizal fungi. To quantify the effects of nitrogen (N) and phosphorus (P) availability on ectomycorrhizal fungal fruiting, we collected > 4,000 epigeous sporocarps representing 19 families during the course of a season in a full factorial NxP addition experiment in six replicate forest stands. Nutrient effects on fruiting shifted as the season progressed, with early fruiting species responding more to P and late-fruiting species responding more to N. The composition of species fruiting in young successional forests differed more with nutrient addition than in mature forests. Sporocarp abundance and species richness were suppressed by N addition. This work shows that N and P availability affect ectomycorrhizal fungal fruiting, with these effects taking place within a context defined by stand age and the progression of fruiting across the season. The data table in this data package contains the sprorocarp observation counts and biomass. Corresponding DNA sequences can be found in GenBank at: https://www.ncbi.nlm.nih.gov/nuccore/?term=MT345178%3AMT345282%5Baccn%5D Additional detail on the MELNHE project, including a datatable of site descriptions and a pdf file with the project description and diagram of plot configuration can be found in this data package: https://portal.edirepository.org/nis/mapbrowse?packageid=knb-lter-hbr.344.2 These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.more » « less
- 
            null (Ed.)The family Inocybaceae has been poorly studied in Africa. Here we describe the first species of the genus Mallocybe from West African and Zambian woodlands dominated by ectomycorrhizal trees of Fabaceae and Phyllanthaceae. The new species M. africana is characterized by orange-brown fruitbodies, a fibrillose pileus, a stipe tapered towards the base and large ellipsoid basidiospores. It resembles many north and south temperate species of Mallocybe but is most closely related to the southeast Asian tropical species, M. errata. M. africana is widely distributed in West Africa (Benin, Togo, Burkina Faso and Ivory Coast) extending to South-eastern Africa in Zambia. Phylogenetic analyses based on 5.8S rDNA, nLSU and RPB2 sequence data confirm that M. africana is nested within Mallocybe. A complete morphological description and illustrations, including photographs and line drawings, are presented.more » « less
- 
            The sea lamprey (Petromyzon marinus) is one of few vertebrate species known to reproducibly eliminate large fractions of its genome during normal embryonic development. This germline-specific DNA is lost in the form of large fragments, including entire chromosomes, and available evidence suggests that DNA elimination acts as a permanent silencing mechanism that prevents the somatic expression of a specific subset of “germline” genes. However, reconstruction of eliminated regions has proven to be challenging due to the complexity of the lamprey karyotype. We applied an integrative approach aimed at further characterization of the large-scale structure of eliminated segments, including: (1) in silico identification of germline-enriched repeats; (2) mapping the chromosomal location of specific repetitive sequences in germline metaphases; and (3) 3D DNA/DNA-hybridization to embryonic lagging anaphases, which permitted us to both verify the specificity of elements to physically eliminated chromosomes and characterize the subcellular organization of these elements during elimination. This approach resulted in the discovery of several repetitive elements that are found exclusively on the eliminated chromosomes, which subsequently permitted the identification of 12 individual chromosomes that are programmatically eliminated during early embryogenesis. The fidelity and specificity of these highly abundant sequences, their distinctive patterning in eliminated chromosomes, and subcellular localization in elimination anaphases suggest that these sequences might contribute to the specific targeting of chromosomes for elimination or possibly in molecular interactions that mediate their decelerated poleward movement in chromosome elimination anaphases, isolation into micronuclei and eventual degradation.more » « less
- 
            Abstract Because of the detrimental effects of terrestrial invasive plant species (TIPS) on native species, ecosystems, public health, and the economy, many countries have been actively looking for strategies to prevent the introduction and minimize the spread of TIPS. Fast and accurate detection of TIPS is essential to achieving these goals. Conventionally, invasive species monitoring has relied on morphological attributes. Recently, DNA‐based species identification (i.e., DNA barcoding) has become more attractive. To investigate whether DNA barcoding can aid in the detection and management of TIPS, we visited multiple nature areas in Southwest Michigan and collected a small piece of leaf tissue from 91 representative terrestrial plant species, most of which are invasive. We extracted DNA from the leaf samples, amplified four genomic loci (ITS,rbcL,matK, andtrnH‐psbA) with PCR, and then purified and sequenced the PCR products. After careful examination of the sequencing data, we were able to identify reliable DNA barcode regions for most species and had an average PCR‐and‐sequencing success rate of 87.9%. We found that the species discrimination rate of a DNA barcode region is inversely related to the ease of PCR amplification and sequencing. Compared withrbcLandmatK, ITS andtrnH‐psbAhave better species discrimination rates (80.6% and 63.2%, respectively). When ITS andtrnH‐psbAare simultaneously used, the species discrimination rate increases to 97.1%. The high species/genus/family discrimination rates of DNA barcoding indicate that DNA barcoding can be successfully employed in TIPS identification. Further increases in the number of DNA barcode regions show little or no additional increases in the species discrimination rate, suggesting that dual‐barcode approaches (e.g., ITS + trnH‐psbA) might be the efficient and cost‐effective method in DNA‐based TIPS identification. Close inspection of nucleotide sequences at the four DNA barcode regions among related species demonstrates that DNA barcoding is especially useful in identifying TIPS that are morphologically similar to other species.more » « less
 An official website of the United States government
An official website of the United States government 
				
			 
					 
					
 
                                    