skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


This content will become publicly available on April 8, 2026

Title: Co-occurrence and successional patterns among diatoms, dinoflagellates, and potential parasites in a coastal upwelling experiment
Diatom-dominated blooms in coastal upwelling systems contribute disproportionately to global primary production. The fate of carbon captured during a diatom bloom is often influenced by species-specific ecological differences. However, successional patterns that take place during a diatom bloom are often oversimplified, and the diversity of diatom adaptations to different stages of a bloom remains poorly characterized. To improve our understanding of diatom specificity to certain conditions within a bloom, we employed microscopy, 18S rRNA amplicons, and biogeochemical analysis within a simulated upwelling mesocosm experiment. We successfully simulated a diatom bloom and found that diatoms bloomed during early and late phases of the bloom. Surprisingly, the relative abundance of congeneric diatoms with the Thalassiosira, Chaetoceros, and Pseudonitzschia displayed opposing patterns that were consistent among experimental mesocosms. The late stage of the bloom was especially interesting because some diatoms continued to bloom among mixotrophic dinoflagellate genera Akashiwo, Heterocapsa, and Prorocentrum. Additionally, Syndiniales putative parasites were correlated with several diatoms, especially in the initial phase of the bloom. The novel observations of consistent rapid successional changes within our mesocosms reflect the ability of diatom and dinoflagellate genera to occupy bloom conditions that fall outside traditional expectations. Syndiniales parasite co-occurrence with blooming diatoms may be important to successional trends of coastal diatom populations, and this parasitic interaction deserves further study in coastal upwelling systems. This study indicates there are underlying diatom traits and biotic interactions that should be considered when estimating their contribution to productivity and carbon cycling within upwelling systems.  more » « less
Award ID(s):
2149606
PAR ID:
10586300
Author(s) / Creator(s):
; ; ;
Publisher / Repository:
Wiley Periodicals LLC
Date Published:
Journal Name:
Limnology and oceanography
ISSN:
1939-5590
Page Range / eLocation ID:
1-18
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Huber, Julie A. (Ed.)
    ABSTRACT Wind-driven upwelling followed by relaxation results in cycles of cold nutrient-rich water fueling intense phytoplankton blooms followed by nutrient depletion, bloom decline, and sinking of cells. Surviving cells at depth can then be vertically transported back to the surface with upwelled waters to seed another bloom. As a result of these cycles, phytoplankton communities in upwelling regions are transported through a wide range of light and nutrient conditions. Diatoms appear to be well suited for these cycles, but their responses to them remain understudied. To investigate the bases for diatoms’ ecological success in upwelling environments, we employed laboratory simulations of a complete upwelling cycle with a common diatom, Chaetoceros decipiens , and coccolithophore, Emiliania huxleyi . We show that while both organisms exhibited physiological and transcriptomic plasticity, the diatom displayed a distinct response enabling it to rapidly shift-up growth rates and nitrate assimilation when returned to light and available nutrients following dark nutrient-deplete conditions. As observed in natural diatom communities, C. decipiens highly expresses before upwelling, or frontloads, key transcriptional and nitrate assimilation genes, coordinating its rapid response to upwelling conditions. Low-iron simulations showed that C. decipiens is capable of maintaining this response when iron is limiting to growth, whereas E. huxleyi is not. Differential expression between iron treatments further revealed specific genes used by each organism under low iron availability. Overall, these results highlight the responses of two dominant phytoplankton groups to upwelling cycles, providing insight into the mechanisms fueling diatom blooms during upwelling events. IMPORTANCE Coastal upwelling regions are among the most biologically productive ecosystems. During upwelling events, nutrient-rich water is delivered from depth resulting in intense phytoplankton blooms typically dominated by diatoms. Along with nutrients, phytoplankton may also be transported from depth to seed these blooms then return to depth as upwelling subsides creating a cycle with varied conditions. To investigate diatoms’ success in upwelling regions, we compare the responses of a common diatom and coccolithophore throughout simulated upwelling cycles under iron-replete and iron-limiting conditions. The diatom exhibited a distinct rapid response to upwelling irrespective of iron status, whereas the coccolithophore’s response was either delayed or suppressed depending on iron availability. Concurrently, the diatom highly expresses, or frontloads, nitrate assimilation genes prior to upwelling, potentially enabling this rapid response. These results provide insight into the molecular mechanisms underlying diatom blooms and ecological success in upwelling regions. 
    more » « less
  2. Abstract Transitions in phytoplankton community composition are typically attributed to ecological succession even in physically dynamic upwelling systems like the California Current Ecosystem (CCE). An expected succession from a high‐chlorophyll (~ 10μg L−1) diatom‐dominated assemblage to a low‐chlorophyll (< 1.0μg L−1) non‐diatom dominated assemblage was observed during a 2013 summer upwelling event in the CCE. Using an interdisciplinary field‐based space‐for‐time approach leveraging both biogeochemical rate measurements and metatranscriptomics, we suggest that this successional pattern was driven primarily by physical processes. An annually recurring mesoscale eddy‐like feature transported significant quantities of high‐phytoplankton‐biomass coastal water offshore. Chlorophyll was diluted during transport, but diatom contributions to phytoplankton biomass and activity (49–62% observed) did not decline to the extent predicted by dilution (18–24% predicted). Under the space‐for‐time assumption, these trends infer diatom biomass and activity and were stimulated during transport. This is hypothesized to result from decreased contact rates with mortality agents (e.g., viruses) and release from nutrient limitation (confirmed by rate data nearshore), as predicted by the Disturbance‐Recovery hypothesis of phytoplankton bloom formation. Thus, the end point taxonomic composition and activity of the phytoplankton assemblage being transported by the eddy‐like feature were driven by physical processes (mixing) affecting physiological (release from nutrient limitation, increased growth) and ecological (reduced mortality) factors that favored the persistence of the nearshore diatoms during transit. The observed connection between high‐diatom‐biomass coastal waters and non‐diatom‐dominated offshore waters supports the proposed mechanisms for this recurring eddy‐like feature moving seed populations of coastal phytoplankton offshore and thereby sustaining their activity. 
    more » « less
  3. Seasonal upwelling in coastal environments supports high primary production by increasing concentrations of inorganic nutrients in the euphotic zone. Diatoms typically dominate planktonic primary production and community composition during seasonal upwelling, especially in temperate ecosystems. Some diatoms elevate their competitive fitness by producing polyunsaturated aldehydes (PUAs). These phytochemicals act to reduce the fecundity of their grazers by reducing sperm motility, lowering egg production and viability, and delaying embryo development, reducing diatom consumptive pressure. While research into the mechanisms driving PUA production includes bottom-up factors (i.e., nutrient availability), few studies have explored how dissolved carbon dioxide (pCO2) concentration affects PUA production. In this study, we analyzed the production of bioactive PUAs (2,4-heptadienal, 2,4-octadienal, and 2,4-decadienal) in two diatom species found in the Salish Sea, an inland sea of the North Pacific ecosystem, under varying pCO2 concentrations that are experienced during seasonal upwelling events. We found that elevated pCO2 concentration caused an increase in carbon uptake in the diatoms, but did not lead to more PUA production, and at times caused a decrease in production. Our results suggest that carbon enrichment does not elevate the chemically defensive capabilities of diatoms by way of elevated PUA production. 
    more » « less
  4. Abstract Despite generally low primary productivity and diatom abundances in oligotrophic subtropical gyres, the North Atlantic Subtropical Gyre (NASG) exhibits significant diatom-driven carbon export on an annual basis. Subsurface pulses of nutrients likely fuel brief episodes of diatom growth, but the exact mechanisms utilized by diatoms in response to these nutrient injections remain understudied within near-natural settings. Here we simulated delivery of subsurface nutrients and compare the response among eukaryotic phytoplankton using a combination of physiological techniques and metatranscriptomics. We show that eukaryotic phytoplankton groups exhibit differing levels of transcriptional responsiveness and expression of orthologous genes in response to release from nutrient limitation. In particular, strategies for use of newly delivered nutrients are distinct among phytoplankton groups. Diatoms channel new nitrate to growth-related strategies while physiological measurements and gene expression patterns of other groups suggest alternative strategies. The gene expression patterns displayed here provide insights into the cellular mechanisms that underlie diatom subsistence during chronic nitrogen-depleted conditions and growth upon nutrient delivery that can enhance carbon export from the surface ocean. 
    more » « less
  5. Abstract Each spring, the North Atlantic experiences one of the largest open‐ocean phytoplankton blooms in the global ocean. Diatoms often dominate the initial phase of the bloom with succession driven by exhaustion of silicic acid. The North Atlantic was sampled over 3.5 weeks in spring 2021 following the demise of the main diatom bloom, allowing mechanisms that sustain continued diatom contributions to be examined. Diatom biomass was initially relatively high with biogenic silica concentrations up to 2.25 μmol Si L−1. A low initial silicic acid concentration of 0.1–0.3 μM imposed severe Si limitation of silica production and likely limited the diatom growth rate. Four storms over the next 3.5 weeks entrained silicic acid into the mixed layer, relieving growth limitation, but uptake limitation persisted. Silica production was modest and dominated by the >5.0 μm size fraction although specific rates were highest in the 0.6–5.0 μm size fraction over most of the cruise. Silica dissolution averaged 68% of silica production. The resupply of silicic acid via storm entrainment and silica dissolution supported a cumulative post‐bloom silica production that was 32% of that estimated during the main bloom event. Diatoms contributed significantly to new and to primary production after the initial bloom, possibly dominating both. Diatom contribution to organic‐carbon export was also significant at 40%–70%. Thus, diatoms can significantly contribute to regional biogeochemistry following initial silicic acid depletion, but that contribution relies on physical processes that resupply the nutrient to surface waters. 
    more » « less