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1. Representative Diatom and Coccolithophore Species Exhibit Divergent Responses throughout Simulated Upwelling Cycles

   https://doi.org/10.1128/mSystems.00188-21  

   Lampe, Robert H.; Hernandez, Gustavo; Lin, Yuan Yu; Marchetti, Adrian (April 2021, mSystems)

   Huber, Julie A. (Ed.)

   ABSTRACT Wind-driven upwelling followed by relaxation results in cycles of cold nutrient-rich water fueling intense phytoplankton blooms followed by nutrient depletion, bloom decline, and sinking of cells. Surviving cells at depth can then be vertically transported back to the surface with upwelled waters to seed another bloom. As a result of these cycles, phytoplankton communities in upwelling regions are transported through a wide range of light and nutrient conditions. Diatoms appear to be well suited for these cycles, but their responses to them remain understudied. To investigate the bases for diatoms’ ecological success in upwelling environments, we employed laboratory simulations of a complete upwelling cycle with a common diatom, Chaetoceros decipiens , and coccolithophore, Emiliania huxleyi . We show that while both organisms exhibited physiological and transcriptomic plasticity, the diatom displayed a distinct response enabling it to rapidly shift-up growth rates and nitrate assimilation when returned to light and available nutrients following dark nutrient-deplete conditions. As observed in natural diatom communities, C. decipiens highly expresses before upwelling, or frontloads, key transcriptional and nitrate assimilation genes, coordinating its rapid response to upwelling conditions. Low-iron simulations showed that C. decipiens is capable of maintaining this response when iron is limiting to growth, whereas E. huxleyi is not. Differential expression between iron treatments further revealed specific genes used by each organism under low iron availability. Overall, these results highlight the responses of two dominant phytoplankton groups to upwelling cycles, providing insight into the mechanisms fueling diatom blooms during upwelling events. IMPORTANCE Coastal upwelling regions are among the most biologically productive ecosystems. During upwelling events, nutrient-rich water is delivered from depth resulting in intense phytoplankton blooms typically dominated by diatoms. Along with nutrients, phytoplankton may also be transported from depth to seed these blooms then return to depth as upwelling subsides creating a cycle with varied conditions. To investigate diatoms’ success in upwelling regions, we compare the responses of a common diatom and coccolithophore throughout simulated upwelling cycles under iron-replete and iron-limiting conditions. The diatom exhibited a distinct rapid response to upwelling irrespective of iron status, whereas the coccolithophore’s response was either delayed or suppressed depending on iron availability. Concurrently, the diatom highly expresses, or frontloads, nitrate assimilation genes prior to upwelling, potentially enabling this rapid response. These results provide insight into the molecular mechanisms underlying diatom blooms and ecological success in upwelling regions. 

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2. Inorganic carbon enrichment does not increase production of polyunsaturated aldehydes in a pelagic and benthic diatom.

   https://doi.org/10.1371/journal.pone.0328171  

   Johnson, Jeremy; Lemkau, Karin L; Parker, Ian W; Olson, Michael Brady (July 2025, PloS one)

   Seasonal upwelling in coastal environments supports high primary production by increasing concentrations of inorganic nutrients in the euphotic zone. Diatoms typically dominate planktonic primary production and community composition during seasonal upwelling, especially in temperate ecosystems. Some diatoms elevate their competitive fitness by producing polyunsaturated aldehydes (PUAs). These phytochemicals act to reduce the fecundity of their grazers by reducing sperm motility, lowering egg production and viability, and delaying embryo development, reducing diatom consumptive pressure. While research into the mechanisms driving PUA production includes bottom-up factors (i.e., nutrient availability), few studies have explored how dissolved carbon dioxide (pCO2) concentration affects PUA production. In this study, we analyzed the production of bioactive PUAs (2,4-heptadienal, 2,4-octadienal, and 2,4-decadienal) in two diatom species found in the Salish Sea, an inland sea of the North Pacific ecosystem, under varying pCO2 concentrations that are experienced during seasonal upwelling events. We found that elevated pCO2 concentration caused an increase in carbon uptake in the diatoms, but did not lead to more PUA production, and at times caused a decrease in production. Our results suggest that carbon enrichment does not elevate the chemically defensive capabilities of diatoms by way of elevated PUA production. 

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3. Phytoplankton community succession and biogeochemistry in a bloom simulation experiment at an estuary–ocean interface

   https://doi.org/10.5194/bg-22-4743-2025  

   Lee, Jenna A; Vineis, Joseph H; Poupon, Mathieu A; Resplandy, Laure; Ward, Bess B (September 2025, Biogeosciences)

   Abstract. Phytoplankton blooms, especially diatom blooms, account for a large fraction of marine carbon fixation. Species succession and biogeochemical parameters change rapidly over a bloom, and determine the resulting biological productivity. This study implemented daily sampling of a 24 L microcosm bloom simulation experiment to assess changes in assemblage and biogeochemical processes while excluding changes due to advection. 15NO3- and H13CO3- tracer incubations were performed alongside pigment and DNA sampling to compare temporal trends in community composition and primary productivity (nitrogen (N) and carbon (C) transport rates). Rapid drawdown of nutrients and maximum C and N transport rates corresponded with peak chlorophyll a and fucoxanthin pigment concentrations. Fucoxanthin, typically associated with diatoms, was the dominant diagnostic pigment, with very low peridinin (dinoflagellate) and zeaxanthin (cyanobacteria) concentrations, indicating a diatom bloom. 18S rRNA gene analysis showed clear community succession throughout the duration of the bloom and multiple species of diatoms co-occurred, including during the bloom peak. The presence of metazoan 18S, high carbon-to-chlorophyll ratios, and a model analysis provide evidence of grazing in the latter half of the bloom. A traditional bloom framework suggests that species succession occurs as the bloom progresses and that phytoplankton diversity reaches a minimum of just one or two dominant species when phytoplankton productivity is at its maximum. However, this study produced a negatively monotonic productivity–diversity relationship (PDR) with relatively high minimum diversity values. This 18S-based analysis therefore presents a more complex relationship between bloom progression and phytoplankton diversity. 

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4. The Combined Effects of Increased pCO2 and Warming on a Coastal Phytoplankton Assemblage: From Species Composition to Sinking Rate

   https://doi.org/10.3389/fmars.2021.622319  

   Feng, Yuanyuan; Chai, Fei; Wells, Mark L.; Liao, Yan; Li, Pengfei; Cai, Ting; Zhao, Ting; Fu, Feixue; Hutchins, David A. (March 2021, Frontiers in Marine Science)

   null (Ed.)

   In addition to ocean acidification, a significant recent warming trend in Chinese coastal waters has received much attention. However, studies of the combined effects of warming and acidification on natural coastal phytoplankton assemblages here are scarce. We conducted a continuous incubation experiment with a natural spring phytoplankton assemblage collected from the Bohai Sea near Tianjin. Experimental treatments used a full factorial combination of temperature (7 and 11°C) and pCO 2 (400 and 800 ppm) treatments. Results suggest that changes in pCO 2 and temperature had both individual and interactive effects on phytoplankton species composition and elemental stoichiometry. Warming mainly favored the accumulation of picoplankton and dinoflagellate biomass. Increased pCO 2 significantly increased particulate organic carbon to particulate organic phosphorus (C:P) and particulate organic carbon to biogenic silica (C:BSi) ratios, and decreased total diatom abundance; in the meanwhile, higher pCO 2 significantly increased the ratio of centric to pennate diatom abundance. Warming and increased pCO 2 both greatly decreased the proportion of diatoms to dinoflagellates. The highest chlorophyll a biomass was observed in the high pCO 2 , high temperature phytoplankton assemblage, which also had the slowest sinking rate of all treatments. Overall, there were significant interactive effects of increased pCO 2 and warming on dinoflagellate abundance, pennate diatom abundance, diatom vs. dinoflagellates ratio and the centric vs. pennate ratio. These findings suggest that future ocean acidification and warming trends may individually and cumulatively affect coastal biogeochemistry and carbon fluxes through shifts in phytoplankton species composition and sinking rates. 

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5. Oligotrophic waters of the Northwest Atlantic support taxonomically diverse diatom communities that are distinct from coastal waters

   https://doi.org/10.1111/jpy.13388  

   Setta, Samantha P; Lerch, Sarah; Jenkins, Bethany D; Dyhrman, Sonya T; Rynearson, Tatiana A (December 2023, Journal of Phycology)

   Abstract Diatoms are important components of the marine food web and one of the most species‐rich groups of phytoplankton. The diversity and composition of diatoms in eutrophic nearshore habitats have been well documented due to the outsized influence of diatoms on coastal ecosystem functioning. In contrast, patterns of both diatom diversity and community composition in offshore oligotrophic regions where diatom biomass is low have been poorly resolved. To compare the diatom diversity and community composition in oligotrophic and eutrophic waters, diatom communities were sampled along a 1,250 km transect from the oligotrophic Sargasso Sea to the coastal waters of the northeast US shelf. Diatom community composition was determined by amplifying and sequencing the 18S rDNA V4 region. Of the 301 amplicon sequence variants (ASVs) identified along the transect, the majority (70%) were sampled exclusively from oligotrophic waters of the Gulf Stream and Sargasso Sea and included the generaBacteriastrum,Haslea,Hemiaulus,Pseudo‐nitzschia, andNitzschia. Diatom ASV richness did not vary along the transect, indicating that the oligotrophic Sargasso Sea and Gulf Stream are occupied by a diverse diatom community. Although ASV richness was similar between oligotrophic and coastal waters, diatom community composition in these regions differed significantly and was correlated with temperature and phosphate, two environmental variables known to influence diatom metabolism and geographic distribution. In sum, oligotrophic waters of the western North Atlantic harbor diverse diatom assemblages that are distinct from coastal regions, and these open ocean diatoms warrant additional study, as they may play critical roles in oligotrophic ecosystems. 

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