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Anionic states of benzonitrile are investigated by high-level electronic structure methods. The calculations using equation-of-motion coupled-cluster theory for electron-attached states confirm earlier conclusions drawn from the photodetachment experiments wherein the ground state of the anion is the valence 2 B 1 state, while the dipole bound state lies adiabatically ∼0.1 eV above. Inclusion of triple excitations and zero-point vibrational energies is important for recovering relative state correct ordering. The computed Franck–Condon factors and photodetachment cross-sections further confirm that the observed photodetachment spectrum originates from the valence anion. The valence anion is electronically bound at its equilibrium geometry, but it is metastable at the equilibrium geometry of the neutral. The dipole-bound state, which is the only bound anionic state at the neutral equilibrium geometry, may serve as a gateway state for capturing the electron. Thus, the emerging mechanistic picture entails electron capture via a dipole bound state, followed by non-adiabatic relaxation forming valence anions.
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Exploring the Light-Emitting Agents in Renilla Luciferases by an Effective QM/MM Approach
Bioluminescence is a fascinating natural phenomenon, wherein organisms produce light through specific biochemical reactions. Among these organisms, Renilla luciferase (RLuc) derived from the sea pansy Renilla reniformis is notable for its blue light emission and has potential applications in bioluminescent tagging. Our study focuses on RLuc8, a variant of RLuc with eight amino acid substitutions. Recent studies have shown that the luminescent emitter coelenteramide can adopt multiple protonation states, which may be influenced by nearby residues at the enzyme's active site, demonstrating a complex interplay between protein structure and bioluminescence. Herein, using the quantum mechanical consistent force field method and the semimacroscopic protein dipole-Langevin dipole method with linear response approximation, we show that the phenolate state of coelenteramide in RLuc8 is the primary light-emitting species in agreement with experimental results. Our calculations also suggest that the proton transfer (PT) from neutral coelenteramide to Asp162 plays a crucial role in the bioluminescence process. Additionally, we reproduced the observed emission maximum for the amide anion in RLuc8-D120A and the pyrazine anion in the presence of a Na+ counterion in RLuc8-D162A, suggesting that these are the primary emitters. Furthermore, our calculations on the neutral emitter in the engineered AncFT-D160A enzyme, structurally akin to RLuc8-D162A but with a considerably blue-shifted emission peak, aligned with the observed data, possibly explaining the variance in emission peaks. Overall, this study demonstrates an effective approach to investigate chromophores' bimolecular states while incorporating the PT process in emission spectra calculations, contributing valuable insights for future studies of PT in photoproteins.
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- Award ID(s):
- 2142727
- PAR ID:
- 10586825
- Publisher / Repository:
- Journal of American Chemical Society
- Date Published:
- Journal Name:
- Journal of the American Chemical Society
- Volume:
- 146
- Issue:
- 20
- ISSN:
- 0002-7863
- Page Range / eLocation ID:
- 13875 to 13885
- Subject(s) / Keyword(s):
- Bioluminescence Chemical Calculations Ions Peptides And Proteins Pyrazine
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1021/jacs.4c00963
