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1. The battle between internal and external forces in microtubule-kinesin active fluid

   Wu, Kun-Ta; Dickie, Joshua H; Weng, Tianxing; Chen, Yen-Chen; He, Yutian; Saxena, Saloni; Pelcovits, Robert A; Powers, Thomas R (October 2024, Bulletin of the American Physical Society)

   Microtubule-kinesin active fluids consume ATP to generate internal active stresses, driving spontaneous and complex flows. While numerous studies have explored the fluid's autonomous behavior, its response to external mechanical forces remains less understood. This study explores how moving boundaries affect the flow dynamics of this active fluid when confined in a thin cuboidal cavity. Our experiments demonstrate a transition from chaotic, disordered vortices to a single, coherent system-wide vortex as boundary speed increases, resembling the behavior of passive fluids like water. Furthermore, our confocal microscopy revealed that boundary motion altered the microtubule network structure near the moving boundary. In the absence of motion, the network exhibited a disordered, isotropic configuration. However, as the boundary moved, microtubule bundles aligned with the shear flow, resulting in a thicker, tilted nematic layer extending over a greater distance from the moving boundary. These findings highlight the competing influences of external shear stress and internal active stress on both flow kinematics and microtubule network structure. This work provides insight into the mechanical properties of active fluids, with potential applications in areas such as adaptive biomaterials that respond to mechanical stimuli in biological environments. *We acknowledge support from the National Science Foundation (NSF-CBET-2045621). This research is performed with computational resources supported by the Academic & Research Computing Group at Worcester Polytechnic Institute. We acknowledge the Brandeis Materials Research Science and Engineering Center (NSF-MRSEC-DMR-2011846) for use of the Biological Materials Facility. 

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2. From chaos to order: Boundary-driven flow transitions in microtubule-kinesin active fluid

   Dickie, J.H.; Weng, T.; Chen, Y.-C.; He, Y.; Saxena, S; Pelcovits, R.; Powers, T.R.; Wu, K.-T. (March 2024, Bulletin of the American Physical Society)

   Microtubule-kinesin active fluids are distinguished from conventional passive fluids by their unique ability to consume local fuel, ATP, to generate internal active stress. This stress drives internal flow autonomously and promotes micromixing, without the need for external pumps. When confined within a looped boundary, these active fluids can spontaneously self-organize into river-like flows. However, the influence of a moving boundary on these flow behaviors has remained elusive. Here, we investigate the role of a moving boundary on the flow kinematics of active fluids. We confined the active fluid within a thin cuboidal boundary with one side serving as a mobile boundary. Our data reveals that when the boundary's moving speed does not exceed the intrinsic flow speed of the active fluid, the fluid is dominated by chaotic, turbulence-like flows. The velocity correlation length of the flow is close to the intrinsic vortex size induced by the internal active stress. Conversely, as the boundary's moving speed greatly exceeds that of the active fluid, the flow gradually transitions to a conventional cavity flow pattern. In this regime, the velocity correlation length increases and saturates to those of water. Our work elucidates the intricate interplay between a moving boundary and active fluid behavior. *We acknowledge support from the National Science Foundation (NSF-CBET-2045621). 

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3. Stability and deformation of biomolecular condensates under the action of shear flow

   https://doi.org/10.1063/5.0209119  

   Coronas, Luis E; Van, Thong; Iorio, Antonio; Lapidus, Lisa J; Feig, Michael; Sterpone, Fabio (June 2024, The Journal of Chemical Physics)

   Biomolecular condensates play a key role in cytoplasmic compartmentalization and cell functioning. Despite extensive research on the physico-chemical, thermodynamic, or crowding aspects of the formation and stabilization of the condensates, one less studied feature is the role of external perturbative fluid flow. In fact, in living cells, shear stress may arise from streaming or active transport processes. Here, we investigate how biomolecular condensates are deformed under different types of shear flows. We first model Couette flow perturbations via two-way coupling between the condensate dynamics and fluid flow by deploying Lattice Boltzmann Molecular Dynamics. We then show that a simplified approach where the shear flow acts as a static perturbation (one-way coupling) reproduces the main features of the condensate deformation and dynamics as a function of the shear rate. With this approach, which can be easily implemented in molecular dynamics simulations, we analyze the behavior of biomolecular condensates described through residue-based coarse-grained models, including intrinsically disordered proteins and protein/RNA mixtures. At lower shear rates, the fluid triggers the deformation of the condensate (spherical to oblated object), while at higher shear rates, it becomes extremely deformed (oblated or elongated object). At very high shear rates, the condensates are fragmented. We also compare how condensates of different sizes and composition respond to shear perturbation, and how their internal structure is altered by external flow. Finally, we consider the Poiseuille flow that realistically models the behavior in microfluidic devices in order to suggest potential experimental designs for investigating fluid perturbations in vitro. 

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4. Order and density fluctuations near the boundary in sheared dense suspensions

   https://doi.org/10.3389/fphy.2022.991540  

   Miller, Joia M.; Blair, Daniel L.; Urbach, Jeffrey S. (November 2022, Frontiers in Physics)

   We introduce a novel approach to reveal ordering fluctuations in sheared dense suspensions, using line scanning in a combined rheometer and laser scanning confocal microscope. We validate the technique with a moderately dense suspension, observing modest shear-induced ordering and a nearly linear flow profile. At high concentration ( ϕ = 0.55) and applied stress just below shear thickening, we report ordering fluctuations with high temporal resolution, and directly measure a decrease in order with distance from the suspension’s bottom boundary as well as a direct correlation between order and particle concentration. Higher applied stress produces shear thickening with large fluctuations in boundary stress which we find are accompanied by dramatic fluctuations in suspension flow speeds. The peak flow rates are independent of distance from the suspension boundary, indicating that they likely arise from transient jamming that creates solid-like aggregates of particles moving together, but only briefly because the high speed fluctuations are interspersed with regions flowing much more slowly, suggesting that shear thickening suspensions possess complex internal structural dynamics, even in relatively simple geometries. 

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5. Discontinuous Shear Thickening in Biological Tissue Rheology

   https://doi.org/10.1103/PhysRevX.14.011027  

   Hertaeg, Michael J.; Fielding, Suzanne M.; Bi, Dapeng (February 2024, Physical Review X)

   During embryonic morphogenesis, tissues undergo dramatic deformations in order to form functional organs. Similarly, in adult animals, living cells and tissues are continually subjected to forces and deformations. Therefore, the success of embryonic development and the proper maintenance of physiological functions rely on the ability of cells to withstand mechanical stresses as well as their ability to flow in a collective manner. During these events, mechanical perturbations can originate from active processes at the single-cell level, competing with external stresses exerted by surrounding tissues and organs. However, the study of tissue mechanics has been somewhat limited to either the response to external forces or to intrinsic ones. In this work, we use an active vertex model of a 2D confluent tissue to study the interplay of external deformations that are applied globally to a tissue with internal active stresses that arise locally at the cellular level due to cell motility. We elucidate, in particular, the way in which this interplay between globally external and locally internal active driving determines the emergent mechanical properties of the tissue as a whole. For a tissue in the vicinity of a solid-fluid jamming or unjamming transition, we uncover a host of fascinating rheological phenomena, including yielding, shear thinning, continuous shear thickening, and discontinuous shear thickening. These model predictions provide a framework for understanding the recently observed nonlinear rheological behaviors in vivo. 

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