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1. Subgraph Neural Networks

   Alsentzer, Emily; Finlayson, Samuel; Li, Michelle; Zitnik, Marinka (January 2020, Advances in neural information processing systems)

   null (Ed.)

   Deep learning methods for graphs achieve remarkable performance on many node-level and graph-level prediction tasks. However, despite the proliferation of the methods and their success, prevailing Graph Neural Networks (GNNs) neglect subgraphs, rendering subgraph prediction tasks challenging to tackle in many impactful applications. Further, subgraph prediction tasks present several unique challenges: subgraphs can have non-trivial internal topology, but also carry a notion of position and external connectivity information relative to the underlying graph in which they exist. Here, we introduce SubGNN, a subgraph neural network to learn disentangled subgraph representations. We propose a novel subgraph routing mechanism that propagates neural messages between the subgraph's components and randomly sampled anchor patches from the underlying graph, yielding highly accurate subgraph representations. SubGNN specifies three channels, each designed to capture a distinct aspect of subgraph topology, and we provide empirical evidence that the channels encode their intended properties. We design a series of new synthetic and real-world subgraph datasets. Empirical results for subgraph classification on eight datasets show that SubGNN achieves considerable performance gains, outperforming strong baseline methods, including node-level and graph-level GNNs, by 19.8% over the strongest baseline. SubGNN performs exceptionally well on challenging biomedical datasets where subgraphs have complex topology and even comprise multiple disconnected components. 

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2. Graph Constrained Group Testing

   https://doi.org/10.4230/LIPIcs.APPROX-RANDOM.2019.46  

   Spang, Bruce; Wootters, Mary (October 2019, Leibniz international proceedings in informatics)

   In network tomography, one goal is to identify a small set of failed links in a network using as little information as possible. One way of setting up this problem is called graph-constrained group testing. Graph-constrained group testing is a variant of the classical combinatorial group testing problem, where the tests that one is allowed are additionally constrained by a graph. In this case, the graph is given by the underlying network topology. The main contribution of this work is to show that for most graphs, the constraints imposed by the graph are no constraint at all. That is, the number of tests required to identify the failed links in graph-constrained group testing is near-optimal even for the corresponding group testing problem with no graph constraints. Our approach is based on a simple randomized construction of tests. To analyze our construction, we prove new results about the size of giant components in randomly sparsified graphs. Finally, we provide empirical results which suggest that our connected-subgraph tests perform better not just in theory but also in practice, and in particular perform better on a real-world network topology. 

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3. Exact Byzantine Consensus on Arbitrary Directed Graphs Under Local Broadcast Model

   https://doi.org/10.4230/LIPIcs.OPODIS.2019.30  

   Khan, Muhammad Samir; Tseng, Lewis; Vaidya, Nitin (January 2019, International Conference on Principles of Distributed Systems)

   We consider Byzantine consensus in a synchronous system where nodes are connected by a network modeled as a directed graph, i.e., communication links between neighboring nodes are not necessarily bi-directional. The directed graph model is motivated by wireless networks wherein asymmetric communication links can occur. In the classical point-to-point communication model, a message sent on a communication link is private between the two nodes on the link. This allows a Byzantine faulty node to equivocate, i.e., send inconsistent information to its neighbors. This paper considers the local broadcast model of communication, wherein transmission by a node is received identically by all of its outgoing neighbors, effectively depriving the faulty nodes of the ability to equivocate. Prior work has obtained sufficient and necessary conditions on undirected graphs to be able to achieve Byzantine consensus under the local broadcast model. In this paper, we obtain tight conditions on directed graphs to be able to achieve Byzantine consensus with binary inputs under the local broadcast model. The results obtained in the paper provide insights into the trade-off between directionality of communication links and the ability to achieve consensus. 

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4. Learning to predict synchronization of coupled oscillators on randomly generated graphs

   https://doi.org/10.1038/s41598-022-18953-8  

   Bassi, Hardeep; Yim, Richard P.; Vendrow, Joshua; Koduluka, Rohith; Zhu, Cherlin; Lyu, Hanbaek (December 2022, Scientific Reports)

   Abstract Suppose we are given a system of coupled oscillators on an unknown graph along with the trajectory of the system during some period. Can we predict whether the system will eventually synchronize? Even with a known underlying graph structure, this is an important yet analytically intractable question in general. In this work, we take an alternative approach to the synchronization prediction problem by viewing it as a classification problem based on the fact that any given system will eventually synchronize or converge to a non-synchronizing limit cycle. By only using some basic statistics of the underlying graphs such as edge density and diameter, our method can achieve perfect accuracy when there is a significant difference in the topology of the underlying graphs between the synchronizing and the non-synchronizing examples. However, in the problem setting where these graph statistics cannot distinguish the two classes very well (e.g., when the graphs are generated from the same random graph model), we find that pairing a few iterations of the initial dynamics along with the graph statistics as the input to our classification algorithms can lead to significant improvement in accuracy; far exceeding what is known by the classical oscillator theory. More surprisingly, we find that in almost all such settings, dropping out the basic graph statistics and training our algorithms with only initial dynamics achieves nearly the same accuracy. We demonstrate our method on three models of continuous and discrete coupled oscillators—the Kuramoto model, Firefly Cellular Automata, and Greenberg-Hastings model. Finally, we also propose an “ensemble prediction” algorithm that successfully scales our method to large graphs by training on dynamics observed from multiple random subgraphs. 

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5. Multi-Class Imbalanced Graph Convolutional Network Learning

   https://doi.org/10.24963/ijcai.2020/398  

   Shi, Min; Tang, Yufei; Zhu, Xingquan; Wilson, David; Liu, Jianxun (July 2020, Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence (IJCAI))

   null (Ed.)

   Networked data often demonstrate the Pareto principle (i.e., 80/20 rule) with skewed class distributions, where most vertices belong to a few majority classes and minority classes only contain a handful of instances. When presented with imbalanced class distributions, existing graph embedding learning tends to bias to nodes from majority classes, leaving nodes from minority classes under-trained. In this paper, we propose Dual-Regularized Graph Convolutional Networks (DR-GCN) to handle multi-class imbalanced graphs, where two types of regularization are imposed to tackle class imbalanced representation learning. To ensure that all classes are equally represented, we propose a class-conditioned adversarial training process to facilitate the separation of labeled nodes. Meanwhile, to maintain training equilibrium (i.e., retaining quality of fit across all classes), we force unlabeled nodes to follow a similar latent distribution to the labeled nodes by minimizing their difference in the embedding space. Experiments on real-world imbalanced graphs demonstrate that DR-GCN outperforms the state-of-the-art methods in node classification, graph clustering, and visualization. 

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