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Abstract Coastal upwelling currents such as the California Current System (CCS) comprise some of the most productive biological systems on the planet. Diatoms dominate these upwelling events in part due to their rapid response to nutrient entrainment. In this region, they may also be limited by the micronutrient iron (Fe), an important trace element primarily involved in photosynthesis and nitrogen assimilation. The mechanisms behind how diatoms physiologically acclimate to the different stages of the upwelling conveyor belt cycle remain largely uncharacterized. Here, we explore their physiological and metatranscriptomic response to the upwelling cycle with respect to the Fe limitation mosaic that exists in the CCS. Subsurface, natural plankton assemblages that would potentially seed surface blooms were examined over wide and narrow shelf regions. The initial biomass and physiological state of the phytoplankton community had a large impact on the overall response to simulated upwelling. Following on‐deck incubations under varying Fe physiological states, our results suggest that diatoms quickly dominated the blooms by “frontloading” nitrogen assimilation genes prior to upwelling. However, diatoms subjected to induced Fe limitation exhibited reductions in carbon and nitrogen uptake and decreasing biomass accumulation. Simultaneously, they exhibited a distinct gene expression response which included increased expression of Fe‐starvation induced proteins and decreased expression of nitrogen assimilation and photosynthesis genes. These findings may have significant implications for upwelling events in future oceans, where changes in ocean conditions are projected to amplify the gradient of Fe limitation in coastal upwelling regions.
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This content will become publicly available on June 24, 2026
Phytoplankton Exhibit Diverse Responses to Different Phases of Upwelling in the California Current System
ABSTRACT Eastern boundary upwelling currents are some of the most biologically productive and diverse regions in the world's oceans. Driven by equatorward winds and Ekman transport, surface waters are transported offshore and replaced by cold, nutrient‐rich deep waters that seed extensive phytoplankton blooms. Studying phytoplankton community succession and physiological acclimation during the initial stages of upwelling is critical to building a comprehensive understanding of phytoplankton responses to upwelling in these important regions. Additionally, factors like lateral transport, seed population dynamics and physiological and molecular shifts are conducive to shaping the community assemblage and primary productivity. This study examines how phytoplankton gene expression and resulting physiology change between early and later phases of upwelling. By incorporating metatranscriptomic analyses and stable isotope incubations to measure nutrient uptake kinetics into our assessment of early and later upwelling stages, we observed variability in phytoplankton assemblages and differential gene expression of phytoplankton that were de‐coupled from their physiology. We show that the gene expression response to a fresh upwelling event precedes their physiological response. Ultimately, understanding how phytoplankton change through the course of an upwelling event is critical to assessing their importance to regional biological rate processes, trophic systems and resulting biogeochemistry.
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- Award ID(s):
- 1751805
- PAR ID:
- 10610830
- Publisher / Repository:
- Wiley-Blackwell
- Date Published:
- Journal Name:
- Environmental Microbiology
- Volume:
- 27
- Issue:
- 6
- ISSN:
- 1462-2912
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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