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1. Genetic predictors of population resilience: A case study of native Brook Trout in headwater streams

   https://doi.org/10.1002/nafm.11003  

   Schwinghamer, Christopher W; Hartman, Kyle J; Welsh, Amy B (June 2024, North American Journal of Fisheries Management)

   Abstract ObjectivePopulations of eastern Brook Trout Salvelinus fontinalis face threats from several sources, such as habitat fragmentation, climate change, and competition with introduced salmonids. As a native species, understanding how these populations will respond to disturbances is paramount to their management and effective conservation. A population's ability to respond to disturbance, its resilience, is influenced by several factors. One such group of factors is population genetics. MethodsWe calculated population resilience metrics based on transient dynamics using population projection matrix models. Long-term demographic data from 23 headwater stream Brook Trout populations were used to parameterize models. Genetic data were collected, and genetic indices were calculated. Partial redundancy analysis was then used to evaluate relationships between resilience metrics and genetic indices. ResultInbreeding coefficient, rarefied allelic richness, pairwise genetic differentiation (FST), and effective population size were all found to be important variables in predicting resilience. ConclusionOur results suggest that genetic isolation may increase the demographic resilience in Brook Trout through faster generation times and higher juvenile survival, but this likely comes at the cost of increased extinction risk and truncated size structures. Genetic indices can provide insight into gene flow between populations, thus the relationship between population connectivity and resilience. Given the importance of connectivity to population resilience, restoring and maintaining movement corridors could affect resilience in headwater Brook Trout populations. 

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2. A new genomic resource to enable standardized surveys of SNPs across the native range of brook trout ( Salvelinus fontinalis )

   https://doi.org/10.1111/1755-0998.13853  

   Mamoozadeh, Nadya R.; Whiteley, Andrew R.; Letcher, Benjamin H.; Kazyak, David C.; Tarsa, Charlene; Meek, Mariah H. (August 2023, Molecular Ecology Resources)

   Abstract Understanding how genetic diversity is distributed across spatiotemporal scales in species of conservation or management concern is critical for identifying large‐scale mechanisms affecting local conservation status and implementing large‐scale biodiversity monitoring programmes. However, cross‐scale surveys of genetic diversity are often impractical within single studies, and combining datasets to increase spatiotemporal coverage is frequently impeded by using different sets of molecular markers. Recently developed molecular tools make surveys based on standardized single‐nucleotide polymorphism (SNP) panels more feasible than ever, but require existing genomic information. Here, we conduct the first survey of genome‐wide SNPs across the native range of brook trout (Salvelinus fontinalis), a cold‐adapted species that has been the focus of considerable conservation and management effort across eastern North America. Our dataset can be leveraged to easily design SNP panels that allow datasets to be combined for large‐scale analyses. We performed restriction site‐associated DNA sequencing for wild brook trout from 82 locations spanning much of the native range and domestic brook trout from 24 hatchery strains used in stocking efforts. We identified over 24,000 SNPs distributed throughout the brook trout genome. We explored the ability of these SNPs to resolve relationships across spatial scales, including population structure and hatchery admixture. Our dataset captures a wide spectrum of genetic diversity in native brook trout, offering a valuable resource for developing SNP panels. We highlight potential applications of this resource with the goal of increasing the integration of genomic information into decision‐making for brook trout and other species of conservation or management concern. 

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3. Distance, elevation and environment as drivers of diversity and divergence in bumble bees across latitude and altitude

   https://doi.org/10.1111/mec.14735  

   Jackson, Jason M.; Pimsler, Meaghan L.; Oyen, Kennan Jeannet; Koch‐Uhuad, Jonathan B.; Herndon, James D.; Strange, James P.; Dillon, Michael E.; Lozier, Jeffrey D. (June 2018, Molecular Ecology)

   Abstract Identifying drivers of dispersal limitation and genetic differentiation is a key goal in biogeography. We examine patterns of population connectivity and genetic diversity using restriction site‐associatedDNAsequencing (RADseq) in two bumble bee species,Bombus vosnesenskiiandBombus bifarius,across latitude and altitude in mountain ranges from California, Oregon and Washington, U.S.A.Bombus vosnesenskii, which occurs across a broader elevational range at most latitudes, exhibits little population structure whileB. bifarius, which occupies a relatively narrow higher elevation niche across most latitudes, exhibits much stronger population differentiation, although gene flow in both species is best explained by isolation with environmental niche resistance. A relationship between elevational habitat breadth and genetic diversity is also apparent, withB. vosnesenskiiexhibiting relatively consistent levels of genetic diversity across its range, whileB. bifariushas reduced genetic diversity at low latitudes, where it is restricted to high‐elevation habitat. The results of this study highlight the importance of the intersect between elevational range and habitat suitability in influencing population connectivity and suggest that future climate warming will have a fragmenting effect even on populations that are presently well connected, as they track their thermal niches upward in montane systems. 

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4. Climate manipulations differentially affect plant population dynamics within versus beyond northern range limits

   https://doi.org/10.1111/1365-2745.13494  

   Reed, Paul B.; Peterson, Megan L.; Pfeifer‐Meister, Laurel E.; Morris, William F.; Doak, Daniel F.; Roy, Bitty A.; Johnson, Bart R.; Bailes, Graham T.; Nelson, Aaron A.; Bridgham, Scott D.; et al (September 2020, Journal of Ecology)

   Abstract Predicting species' range shifts under future climate is a central goal of conservation ecology. Studying populations within and beyond multiple species' current ranges can help identify whether demographic responses to climate change exhibit directionality, indicative of range shifts, and whether responses are uniform across a suite of species.We quantified the demographic responses of six native perennial prairie species planted within and, for two species, beyond their northern range limits to a 3‐year experimental manipulation of temperature and precipitation at three sites spanning a latitudinal climate gradient in the Pacific Northwest, USA. We estimated population growth rates (λ) using integral projection models and tested for opposing responses to climate in different demographic vital rates (demographic compensation).Where species successfully established reproductive populations, warming negatively affectedλat sites within species' current ranges. Contrarily, warming and drought positively affectedλfor the two species planted beyond their northern range limits. Most species failed to establish a reproductive population at one or more sites within their current ranges, due to extremely low germination and seedling survival. We found little evidence of demographic compensation buffering populations to the climate treatments.Synthesis. These results support predictions across a suite of species that ranges will need to shift with climate change as populations within current ranges become increasingly vulnerable to decline. Species capable of dispersing beyond their leading edges may be more likely to persist, as our evidence suggests that projected changes in climate may benefit such populations. If species are unable to disperse to new habitat on their own, assisted migration may need to be considered to prevent the widespread loss of vulnerable species. 

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5. Diminished warming tolerance and plasticity in low-latitude populations of a marine gastropod

   https://doi.org/10.1093/conphys/coab039  

   Villeneuve, Andrew R; Komoroske, Lisa M; Cheng, Brian S (January 2021, Conservation Physiology)

   Cooke, Steve (Ed.)

   Abstract Models of species response to climate change often assume that physiological traits are invariant across populations. Neglecting potential intraspecific variation may overlook the possibility that some populations are more resilient or susceptible than others, creating inaccurate predictions of climate impacts. In addition, phenotypic plasticity can contribute to trait variation and may mediate sensitivity to climate. Quantifying such forms of intraspecific variation can improve our understanding of how climate can affect ecologically important species, such as invasive predators. Here, we quantified thermal performance (tolerance, acclimation capacity, developmental traits) across seven populations of the predatory marine snail (Urosalpinx cinerea) from native Atlantic and non-native Pacific coast populations in the USA. Using common garden experiments, we assessed the effects of source population and developmental acclimation on thermal tolerance and developmental traits of F1 snails. We then estimated climate sensitivity by calculating warming tolerance (thermal tolerance − habitat temperature), using field environmental data. We report that low-latitude populations had greater thermal tolerance than their high latitude counterparts. However, these same low-latitude populations exhibited decreased thermal tolerance when exposed to environmentally realistic higher acclimation temperatures. Low-latitude native populations had the greatest climate sensitivity (habitat temperatures near thermal limits). In contrast, invasive Pacific snails had the lowest climate sensitivity, suggesting that these populations are likely to persist and drive negative impacts on native biodiversity. Developmental rate significantly increased in embryos sourced from populations with greater habitat temperature but had variable effects on clutch size and hatching success. Thus, warming can produce widely divergent responses within the same species, resulting in enhanced impacts in the non-native range and extirpation in the native range. Broadly, our results highlight how intraspecific variation can alter management decisions, as this may clarify whether management efforts should be focused on many or only a few populations. 

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