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1. Determinants of microbial community structure in supraglacial pool sediments of monsoonal Tibetan Plateau

   https://doi.org/10.1128/spectrum.00754-24  

   Fair, Heather; Hamilton, Trinity L; Smiley, Peter C; Liu, Qiao (September 2024, Microbiology Spectrum)

   Cuomo, Christina A (Ed.)

   Abstract Supraglacial pools are prevalent on debris-covered mountain glaciers, yet only limited information is available on the microbial communities within these habitats. Our research questions for this preliminary study were: (1) What microbes occur in supraglacial pool sediments of monsoonal Tibet?; (2) Which abiotic and biotic habitat variables have the most influence on the microbial community structure?; and (3) Does microbial composition of supraglacial pool sediments differ from that of glacial-melt stream pool sediments? We collected microbial samples for 16S rRNA sequencing and invertebrates for enumeration and identification and measured 14 abiotic variables from 46 supraglacial pools and nine glacial-melt stream pools in 2018 and 2019. Generalized linear model analyses, small sample Akaike information criterion, and variable importance scores were used to identify the best predictor variables of microbial community structure. Multi-response permutation procedure (MRPP) was used to compare taxa composition between supraglacial pools and stream pools. The most abundant phyla in supraglacial pool sediments were Proteobacteria, Actinobacteria, Bacteroidota, Chloroflexi, and Cyanobacteria. Genera richness, indicator genera richness, andPolaromonasrelative abundance were best predicted by Chironomidae larvae abundance. 

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2. Diversity and co-occurrence networks of bacterial and fungal communities on two typical debris-covered glaciers, southeastern Tibetan Plateau

   https://doi.org/10.1016/j.micres.2023.127409  

   Hu, Yang; Fair, Heather; Liu, Qiao; Wang, Ziwei; Duan, Baoli; Lu, Xuyang (August 2023, Microbiological Research)

   Debris-covered glaciers (DCGs) are globally distributed and thought to contain greater microbial diversity than clean surface continental glaciers, but the ecological characteristics of microbial communities on the surface of DCGs have remained underexplored. Here, we investigated bacterial and fungal diversity and co-occurrence networks on the supraglacial debris habitat of two DCGs (Hailuogou and Dagongba Glaciers) in the southeastern Tibetan Plateau. We found that the supraglacial debris harbored abundant microbes with Proteobacteria occupying more than half (51.5%) of the total bacteria operational taxonomic units. The composition, diversity, and co-occurrence networks of both bacterial and fungal communities in the debris were significantly different between Hailuogou Glacier and Dagongba Glacier even though the glaciers are geographically adjacent within the same mountain range. Bacteria were more diverse in the debris of the Dagongba Glacier, where a lower surface velocity and thicker debris layer allowed the supraglacial debris to continuously weather and accumulate nutrients. Fungi were more diverse in the debris of the Hailuogou Glacier, which experiences a wetter monsoonal climate, is richer in calcium, has greater debris instability, and greater ice velocity than the Dagongba Glacier. These factors may provide ideal conditions for the dispersal and propagation of fungi spores on the Hailuogou Glacier. In addition, we found an obvious gradient of bacterial diversity along the supraglacial debris transect on the Hailuogou Glacier. Bacterial diversity was lower where debris cover was thin and scattered and became more diverse near the glacial terminus in thick, slow-moving debris. No such increasing bacterial pattern was detected on the Dagongba Glacier, which implies a positive relationship of debris age, thickness, and weathering on bacterial diversity. Additionally, a highly connected bacterial co-occurrence network with low modularity was found in the debris of the Hailuogou Glacier. In contrast, debris from the Dagongba Glacier exhibited less connected but more modularized co-occurrence networks of both bacterial and fungal communities. These findings indicate that less disturbed supraglacial debris conditions are crucial for microbes to form stable communities on DCGs. 

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3. Microbial communities from weathered outcrops of a sulfide‐rich ultramafic intrusion, and implications for mine waste management

   https://doi.org/10.1111/1462-2920.16489  

   Hobart, Kathryn K.; Greensky, ZhaaZhaawaanong; Hernandez, Kimberly; Feinberg, Joshua M.; Bailey, Jake V.; Jones, Daniel S. (December 2023, Environmental Microbiology)

   Abstract The Duluth Complex (DC) contains sulfide‐rich magmatic intrusions that represent one of the largest known economic deposits of copper, nickel, and platinum group elements. Previous work showed that microbial communities associated with experimentally‐weathered DC waste rock and tailings were dominated by uncultivated taxa and organisms not typically associated with mine waste. However, those experiments were designed for kinetic testing and do not necessarily represent the conditions expected for long‐term environmental weathering. We used 16S rRNA gene methods to characterize the microbial communities present on the surfaces of naturally‐weathered and historically disturbed outcrops of DC material. Rock surfaces were dominated by diverse unculturedKtedonobacteria,Acetobacteria, andActinobacteria, with abundant algae and other phototrophs. These communities were distinct from microbial assemblages from experimentally‐weathered DC rocks, suggesting different energy and nutrient resources in environmental samples. Sulfide mineral incubations performed with and without algae showed that photosynthetic microorganisms could have an inhibitory effect on autotrophic populations, resulting in slightly lower sulfate release and differences in dominant microorganisms. The microbial assemblages from these weathered outcrops show how communities develop during weathering of sulfide‐rich DC rocks and represent baseline data that could evaluate the effectiveness of future reclamation of waste produced by large‐scale mining operations. 

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4. Glacial retreat converts exposed landscapes from net carbon sinks to sources

   https://doi.org/10.1038/s43247-025-02404-z  

   Pain, A_J; Martin, J_B; Martin, E_E; Salinas-Reyes, J_T; Bennett, C. (May 2025, Communications Earth & Environment)

   Abstract Retreat of continental ice sheets exposes comminuted sediment in disequilibrium with non-glacial conditions. Weathering of this sediment may create climate feedbacks by altering exchange of greenhouse gases between atmosphere and landscapes. Here we show in a partially deglaciated watershed in southwest Greenland that glacial meltwater contains low concentrations of reactive dissolved organic carbon that enhances weathering of freshly comminuted sediment causing net sequestration of carbon dioxide. In contrast, soil water reactions enhance methanogenesis and carbon dioxide production and create greenhouse gas sources as organic carbon is remineralized. We suggest that a change from greenhouse gas sinks in glacial meltwater to greenhouse gas sources in soil water creates a switch from a negative to positive warming feedback during glacial-interglacial transitions, but a negative warming feedback may return with future anthropogenic warming, glacial retreat, and increased meltwater production. We anticipate changing weathering reactions following exposure also alter nutrient and radiogenic isotope exports. 

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5. Soil microbial community response to ectomycorrhizal dominance in diverse neotropical montane forests

   https://doi.org/10.1007/s00572-023-01134-4  

   Edwards, Joseph D.; Krichels, Alexander H.; Seyfried, Georgia S.; Dalling, James; Kent, Angela D.; Yang, Wendy H. (January 2024, Mycorrhiza)

   Abstract Ectomycorrhizal (EM) associations can promote the dominance of tree species in otherwise diverse tropical forests. These EM associations between trees and their fungal mutualists have important consequences for soil organic matter cycling, yet the influence of these EM-associated effects on surrounding microbial communities is not well known, particularly in neotropical forests. We examined fungal and prokaryotic community composition in surface soil samples from mixed arbuscular mycorrhizal (AM) and ectomycorrhizal (EM) stands as well as stands dominated by EM-associatedOreomunnea mexicana(Juglandaceae) in four watersheds differing in soil fertility in the Fortuna Forest Reserve, Panama. We hypothesized that EM-dominated stands would support distinct microbial community assemblages relative to the mixed AM-EM stands due to differences in carbon and nitrogen cycling associated with the dominance of EM trees. We expected that this microbiome selection in EM-dominated stands would lead to lower overall microbial community diversity and turnover, with tighter correspondence between general fungal and prokaryotic communities. We measured fungal and prokaryotic community composition via high-throughput Illumina sequencing of theITS2(fungi) and16SrRNA (prokaryotic) gene regions. We analyzed differences in alpha and beta diversity between forest stands associated with different mycorrhizal types, as well as the relative abundance of fungal functional groups and various microbial taxa. We found that fungal and prokaryotic community composition differed based on stand mycorrhizal type. There was lower prokaryotic diversity and lower relative abundance of fungal saprotrophs and pathogens in EM-dominated than AM-EM mixed stands. However, contrary to our prediction, there was lower homogeneity for fungal communities in EM-dominated stands compared to mixed AM-EM stands. Overall, we demonstrate that EM-dominated tropical forest stands have distinct soil microbiomes relative to surrounding diverse forests, suggesting that EM fungi may filter microbial functional groups in ways that could potentially influence plant performance or ecosystem function. 

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