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1. Exploring FlyBase Data Using QuickSearch

   https://doi.org/10.1002/cpz1.731  

   Marygold, Steven J.; the FlyBase Consortium (April 2023, Current Protocols)

   Abstract FlyBase (www.flybase.org) is the primary online database of genetic, genomic, and functional information aboutDrosophila melanogaster. The long and rich history ofDrosophilaresearch, combined with recent surges in genomic‐scale and high‐throughput technologies, means that FlyBase now houses a huge quantity of data. Researchers need to be able to query these data rapidly and intuitively, and the QuickSearch tool has been designed to meet these needs. This tool is conveniently located on the FlyBase homepage and is organized into a series of simple tabbed interfaces that cover the major data and annotation classes within the database. This article describes the functionality of all aspects of the QuickSearch tool. With this knowledge, FlyBase users will be equipped to take full advantage of all QuickSearch features and thereby gain improved access to data relevant to their research. © 2023 The Authors. Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: Using the “Search FlyBase” tab of QuickSearch Basic Protocol 2: Using the “Data Class” tab of QuickSearch Basic Protocol 3: Using the “References” tab of QuickSearch Basic Protocol 4: Using the “Gene Groups” tab of QuickSearch Basic Protocol 5: Using the “Pathways” tab of QuickSearch Basic Protocol 6: Using the “GO” tab of QuickSearch Basic Protocol 7: Using the “Protein Domains” tab of QuickSearch Basic Protocol 8: Using the “Expression” tab of QuickSearch Basic Protocol 9: Using the “GAL4 etc” tab of QuickSearch Basic Protocol 10: Using the “Phenotype” tab of QuickSearch Basic Protocol 11: Using the “Human Disease” tab of QuickSearch Basic Protocol 12: Using the “Homologs” tab of QuickSearch Support Protocol 1: Managing FlyBase hit lists 

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2. Quantifying Soil Phosphorus Dynamics: A Data Assimilation Approach

   https://doi.org/10.1029/2018JG004903  

   Hou, Enqing; Lu, Xingjie; Jiang, Lifen; Wen, Dazhi; Luo, Yiqi (July 2019, Journal of Geophysical Research: Biogeosciences)

   Abstract The dynamics of soil phosphorus (P) control its bioavailability. Yet it remains a challenge to quantify soil P dynamics. Here we developed a soil P dynamics (SPD) model. We then assimilated eight data sets of 426‐day changes in Hedley P fractions into the SPD model, to quantify the dynamics of six major P pools in eight soil samples that are representative of a wide type of soils. The performance of our SPD model was better for labile P, secondary mineral P, and occluded P than for nonoccluded organic P (Po) and primary mineral P. All parameters describing soil P dynamics were approximately constrained by the data sets. The average turnover rates were labile P 0.040 g g⁻¹day⁻¹, nonoccluded Po 0.051 g g⁻¹day⁻¹, secondary mineral P 0.023 g g⁻¹day⁻¹, primary mineral P 0.00088 g g⁻¹day⁻¹, occluded Po 0.0066 g g⁻¹day⁻¹, and occluded inorganic P 0.0065 g g⁻¹day⁻¹, in the greenhouse environment studied. Labile P was transferred on average more to nonoccluded Po (transfer coefficient of 0.42) and secondary mineral P (0.38) than to plants (0.20). Soil pH and organic C concentration were the key soil properties regulating the competition for P between plants and soil secondary minerals. The turnover rate of labile P was positively correlated with that of nonoccluded Po and secondary mineral P. The pool size of labile P was most sensitive to its turnover rate. Overall, we suggest data assimilation can contribute significantly to an improved understanding of soil P dynamics. 

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3. Advances in Selected Heterocyclization Methods

   https://doi.org/10.1055/s-0042-1751429  

   Rivas, Mónica; Gevorgyan, Vladimir (July 2023, Synlett)

   Abstract This Account summarizes efforts in our group toward synthesis of heterocycles in the past decade. Selected examples of transannulative heterocyclizations, intermediate construction of reactive compounds en route to these important motifs, and newer developments of a radical approach are outlined. 1 Introduction 2 Transannulative Heterocyclization 2.1 Rhodium-Catalyzed Transannulative Heterocyclization 2.2 Copper-Catalyzed Transannulative Heterocyclization 3 Synthesis of Heterocycles from Reactive Precursors 3.1 Synthesis of Heterocycles from Diazo Compounds 3.2 Synthesis of Heterocycles from Alkynones 4 Radical Heterocyclization 4.1 Light-Induced Radical Heterocyclization 4.2 Light-Free Radical Heterocyclization 7 Conclusion 

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4. Birds are not the only ones impacted by guidance to cease bird feeding

   https://doi.org/10.1002/pan3.10566  

   Dayer, Ashley A.; Pototsky, P. Christy; Hall, Richard J.; Hawley, Dana M.; Phillips, Tina B.; Bonter, David N.; Dietsch, Alia M.; Greig, Emma; Hochachka, Wesley M. (December 2023, People and Nature)

   Abstract Humans have a particularly strong connection with birds, driving the enormous popularity of residential bird feeding in much of the world.We conducted a web search to document US state wildlife management agency responses to two recent avian disease outbreaks, finding that 23 agencies made recommendations to cease feeding wild birds in 2021–2022.The psychological benefits of bird feeding for humans are well‐documented but often overlooked in management decisions in response to avian disease outbreaks.Likewise, ecological evidence does not necessarily support ceasing bird feeding to reduce the spread of every avian disease.Ecological and social science need to be applied in tandem to ensure that well‐intended guidance to cease feeding of birds does not have unintended consequences. 

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5. A Century‐Long Trajectory of Phosphorus Loading and Export From Mississippi River Basin to the Gulf of Mexico: Contributions of Multiple Environmental Changes

   https://doi.org/10.1029/2022GB007347  

   Bian, Zihao; Pan, Shufen; Wang, Zhuonan; Yao, Yuanzhi; Xu, Rongting; Shi, Hao; Kalin, Latif; Anderson, Christopher; Justic, Dubravko; Lohrenz, Steven; et al (June 2022, Global Biogeochemical Cycles)

   Abstract Phosphorus (P) control is critical to mitigating eutrophication in aquatic ecosystems, but the effectiveness of controlling P export from soils has been limited by our poor understanding of P dynamics along the land‐ocean aquatic continuum as well as the lack of well‐developed process models that effectively couple terrestrial and aquatic biogeochemical P processes. Here, we coupled riverine P biogeochemical processes and water transport with terrestrial processes within the framework of the Dynamic Land Ecosystem Model to assess how multiple environmental changes, including fertilizer and manure P uses, land use, climate, and atmospheric CO₂, have affected the long‐term dynamics of P loading and export from the Mississippi River Basin to the Gulf of Mexico during 1901–2018. Simulations show that riverine exports of dissolved inorganic phosphorus (DIP), dissolved organic phosphorus, particulate organic phosphorus (POP), and particulate inorganic phosphorus (PIP) increased by 42%, 53%, 60%, and 53%, respectively, since the 1960s. Riverine DIP and PIP exports were the dominant components of the total P flux. DIP export was mainly enhanced by the growing mineral P fertilizer use in croplands, while increased PIP and POP exports were a result of the intensified soil erosion due to increased precipitation. Climate variability resulted in substantial interannual and decadal variations in P loading and export. Soil legacy P continues to contribute to P loading. Our findings highlight the necessity to adopt effective P management strategies to control P losses through reductions in soil erosion, and additionally, to improve P use efficiency in crop production. 

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