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1. Identification of next-generation International Humic Substances Society reference materials for advancing the understanding of the role of natural organic matter in the Anthropocene

   https://doi.org/10.1007/s00027-022-00923-x  

   Chin, Yu-Ping; McKnight, Diane M.; D’Andrilli, Juliana; Brooks, Nicole; Cawley, Kaelin; Guerard, Jennifer; Perdue, E. Michael; Stedmon, Colin A.; Tratnyek, Paul G.; Westerhoff, Paul; et al (January 2023, Aquatic Sciences)

   Abstract Many challenges remain before we can fully understand the multifaceted role that natural organic matter (NOM) plays in soil and aquatic systems. These challenges remain despite the considerable progress that has been made in understanding NOM’s properties and reactivity using the latest analytical techniques. For nearly 4 decades, the International Humic Substances Society (IHSS, which is a non-profit scientific society) has distributed standard substances that adhere to strict isolation protocols and reference materials that are collected in bulk and originate from clearly defined sites. These NOM standard and reference samples offer relatively uniform materials for designing experiments and developing new analytical methods. The protocols for isolating NOM, and humic and fulvic acid fractions of NOM utilize well-established preparative scale column chromatography and reverse osmosis methods. These standard and reference NOM samples are used by the international scientific community to study NOM across a range of disciplines from engineered to natural systems, thereby seeding the transfer of knowledge across research fields. Recently, powerful new analytical techniques used to characterize NOM have revealed complexities in its composition that transcend the “microbial” vs. “terrestrial” precursor paradigm. To continue to advance NOM research in the Anthropocene epoch, a workshop was convened to identify potential new sites for NOM samples that would encompass a range of sources and precursor materials and would be relevant for studying NOM’s role in mediating environmental and biogeochemical processes. We anticipate that expanding the portfolio of IHSS reference and standard NOM samples available to the research community will enable this diverse group of scientists and engineers to better understand the role that NOM plays globally under the influence of anthropogenic mediated changes. 

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2. Chlorophyll Production in the Amundsen Sea Boosts Heat Flux to Atmosphere and Weakens Heat Flux to Ice Shelves

   https://doi.org/10.1029/2024JC021121  

   Twelves, A G; Goldberg, D N; Holland, P R; Henley, S F; Mazloff, M R; Jones, D C (September 2024, Journal of Geophysical Research: Oceans)

   Abstract The Amundsen Sea in West Antarctica features rapidly thinning ice shelves, large polynyas, and sizable spring phytoplankton blooms. Although considerable effort has gone into characterizing heat fluxes between the Amundsen Sea, its associated ice shelves, and the overlying atmosphere, the effect of the phytoplankton blooms on the distribution of heat remains poorly understood. In this modeling study, we implement a feedback from biogeochemistry onto physics into MITgcm‐BLING and use it to show that high levels of chlorophyll—concentrated in the Amundsen Sea Polynya and the Pine Island Polynya—have the potential to increase springtime surface warming in polynyas by steepening the attenuation profile of solar radiation with depth. The chlorophyll‐associated warm anomaly (on average between +0.2C and +0.3C) at the surface is quickly dissipated to the atmosphere, by increases in longwave, latent and sensible heat loss from open water areas. Outside of the coastal polynyas, the summertime warm anomaly leads to an average sea ice thinning of 1.7 cm across the region, and stimulates up to 20% additional seasonal melting near the fronts of ice shelves. The accompanying cold anomaly, caused by shading of deeper waters, persists year‐round and affects a decrease in the volume of Circumpolar Deep Water on the continental shelf. This cooling ultimately leads to an average sea ice thickening of 3.5 cm and, together with associated changes to circulation, reduces basal melting of Amundsen Sea ice shelves by approximately 7% relative to the model scenario with no phytoplankton bloom. 

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3. Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents

   https://doi.org/10.1038/s41396-020-00849-y  

   McAllister, Sean M.; Vandzura, Rebecca; Keffer, Jessica L.; Polson, Shawn W.; Chan, Clara S. (May 2021, The ISME Journal)

   null (Ed.)

   Abstract In principle, iron oxidation can fuel significant primary productivity and nutrient cycling in dark environments such as the deep sea. However, we have an extremely limited understanding of the ecology of iron-based ecosystems, and thus the linkages between iron oxidation, carbon cycling, and nitrate reduction. Here we investigate iron microbial mats from hydrothermal vents at Lōʻihi Seamount, Hawaiʻi, using genome-resolved metagenomics and metatranscriptomics to reconstruct potential microbial roles and interactions. Our results show that the aerobic iron-oxidizing Zetaproteobacteria are the primary producers, concentrated at the oxic mat surface. Their fixed carbon supports heterotrophs deeper in the mat, notably the second most abundant organism, Candidatus Ferristratum sp. (uncultivated gen. nov.) from the uncharacterized DTB120 phylum. Candidatus Ferristratum sp., described using nine high-quality metagenome-assembled genomes with similar distributions of genes, expressed nitrate reduction genes narGH and the iron oxidation gene cyc2 in situ and in response to Fe(II) in a shipboard incubation, suggesting it is an anaerobic nitrate-reducing iron oxidizer. Candidatus Ferristratum sp. lacks a full denitrification pathway, relying on Zetaproteobacteria to remove intermediates like nitrite. Thus, at Lōʻihi, anaerobic iron oxidizers coexist with and are dependent on aerobic iron oxidizers. In total, our work shows how key community members work together to connect iron oxidation with carbon and nitrogen cycling, thus driving the biogeochemistry of exported fluids. 

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4. Colony formation in <i>Phaeocystis antarctica</i>: connecting molecular mechanisms with iron biogeochemistry

   https://doi.org/10.5194/bg-15-4923-2018  

   Bender, Sara J.; Moran, Dawn M.; McIlvin, Matthew R.; Zheng, Hong; McCrow, John P.; Badger, Jonathan; DiTullio, Giacomo R.; Allen, Andrew E.; Saito, Mak A. (January 2018, Biogeosciences)

   Abstract. Phaeocystis antarctica is an important phytoplankter of the Ross Sea where it dominates the early season bloom after sea ice retreat and is a major contributor to carbon export. The factors that influence Phaeocystis colony formation and the resultant Ross Sea bloom initiation have been of great scientific interest, yet there is little known about the underlying mechanisms responsible for these phenomena. Here, we present laboratory and field studies on Phaeocystis antarctica grown under multiple iron conditions using a coupled proteomic and transcriptomic approach. P. antarctica had a lower iron limitation threshold than a Ross Sea diatom Chaetoceros sp., and at increased iron nutrition (&gt;120pM Fe') a shift from flagellate cells to a majority of colonial cells in P. antarctica was observed, implying a role for iron as a trigger for colony formation. Proteome analysis revealed an extensive and coordinated shift in proteome structure linked to iron availability and life cycle transitions with 327 and 436 proteins measured as significantly different between low and high iron in strains 1871 and 1374, respectively. The enzymes flavodoxin and plastocyanin that can functionally replace iron metalloenzymes were observed at low iron treatments consistent with cellular iron-sparing strategies, with plastocyanin having a larger dynamic range. The numerous isoforms of the putative iron-starvation-induced protein (ISIP) group (ISIP2A and ISIP3) had abundance patterns coinciding with that of either low or high iron (and coincident flagellate or the colonial cell types in strain 1871), implying that there may be specific iron acquisition systems for each life cycle type. The proteome analysis also revealed numerous structural proteins associated with each cell type: within flagellate cells actin and tubulin from flagella and haptonema structures as well as a suite of calcium-binding proteins with EF domains were observed. In the colony-dominated samples a variety of structural proteins were observed that are also often found in multicellular organisms including spondins, lectins, fibrillins, and glycoproteins with von Willebrand domains. A large number of proteins of unknown function were identified that became abundant at either high or low iron availability. These results were compared to the first metaproteomic analysis of a Ross Sea Phaeocystis bloom to connect the mechanistic information to the in situ ecology and biogeochemistry. Proteins associated with both flagellate and colonial cells were observed in the bloom sample consistent with the need for both cell types within a growing bloom. Bacterial iron storage and B₁₂ biosynthesis proteins were also observed consistent with chemical synergies within the colony microbiome to cope with the biogeochemical conditions. Together these responses reveal a complex, highly coordinated effort by P. antarctica to regulate its phenotype at the molecular level in response to iron and provide a window into the biology, ecology, and biogeochemistry of this group. 

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5. Factors controlling the transfer of biogenic organic species from seawater to sea spray aerosol

   https://doi.org/10.1038/s41598-022-07335-9  

   Santander, Mitchell V.; Schiffer, Jamie M.; Lee, Christopher; Axson, Jessica L.; Tauber, Michael J.; Prather, Kimberly A. (December 2022, Scientific Reports)

   Abstract Ocean waves transfer sea spray aerosol (SSA) to the atmosphere, and these SSA particles can be enriched in organic matter relative to salts compared to seawater ratios. A fundamental understanding of the factors controlling the transfer of biogenic organic matter from the ocean to the atmosphere remains elusive. Field studies that focus on understanding the connection between organic species in seawater and SSA are complicated by the numerous processes and sources affecting the composition of aerosols in the marine environment. Here, an isolated ocean–atmosphere system enables direct measurements of the sea–air transfer of different classes of biogenic organic matter over the course of two phytoplankton blooms. By measuring excitation–emission matrices of bulk seawater, the sea surface microlayer, and SSA, we investigate time series of the transfer of fluorescent species including chlorophyll-a, protein-like substances, and humic-like substances. Herein, we show the emergence of different molecular classes in SSA at specific times over the course of a phytoplankton bloom, suggesting that SSA chemical composition changes over time in response to changing ocean biological conditions. We compare the temporal behaviors for the transfer of each component, and discuss the factors contributing to differences in transfer between phases. 

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