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1. Wild microbiomes of striped plateau lizards vary with reproductive season, sex, and body size

   https://doi.org/10.1038/s41598-022-24518-6  

   Bunker, Marie E.; Arnold, A. Elizabeth; Weiss, Stacey L. (December 2022, Scientific Reports)

   Abstract Long-term studies of animal microbiomes under natural conditions are valuable for understanding the effects of host demographics and environmental factors on host-associated microbial communities, and how those effects interact and shift over time. We examined how the cloacal microbiome of wild Sceloporus virgatus (the striped plateau lizard) varies under natural conditions in a multi-year study. Cloacal swabs were collected from wild-caught lizards across their entire active season and over three years in southeastern Arizona, USA. Analyses of 16S rRNA data generated on the Illumina platform revealed that cloacal microbiomes of S. virgatus vary as a function of season, sex, body size, and reproductive state, and do so independently of one another. Briefly, microbial diversity was lowest in both sexes during the reproductive season, was higher in females than in males, and was lowest in females when they were vitellogenic, and microbiome composition varied across seasons, sexes, and sizes. The pattern of decreased diversity during reproductive periods with increased sociality is surprising, as studies in other systems often suggest that microbial diversity generally increases with sociality. The cloacal microbiome was not affected significantly by hibernation and was relatively stable from year to year. This study highlights the importance of long term, wide-scale microbiome studies for capturing accurate perspectives on microbiome diversity and composition in animals. It also serves as a warning for comparisons of microbiomes across species, as each may be under a different suite of selective pressures or exhibit short-term variation from external or innate factors, which may differ in a species-specific manner. 

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2. Recovered microbiome of an oviparous lizard differs across gut and reproductive tissues, cloacal swabs, and faeces

   https://doi.org/10.1111/1755-0998.13573  

   Bunker, Marie E.; Martin, Mark O.; Weiss, Stacey L. (December 2021, Molecular Ecology Resources)

   Microbial diversity and community function are related, and can be highly specialized in different gut regions. The cloacal microbiome of Sceloporus virgatus females provides antifungal protection to eggshells, a specialized function that suggests a specialized microbiome. Here, we describe the cloacal, intestinal, and oviductal microbiome from S. virgatus gravid females, adding to growing evidence of microbiome localization in reptiles and other taxa. We further assessed whether common methods for sampling gastrointestinal (GI) microbes – cloacal swabs and feces – provide accurate representations of these microbial communities. We found that different regions of the gut had unique microbial communities. The cloacal microbiome showed extreme specialization averaging 99% Proteobacteria (Phylum) and 83% Enterobacteriacaea (Family). Enterobacteriacaea decreased up the GI and reproductive tracts. Cloacal swabs recovered communities similar to that of lower intestine and cloacal tissues. In contrast, fecal samples had much higher diversity and a distinct composition (common Phyla: 62% Firmicutes, 18% Bacteroidetes, 10% Proteobacteria; common Families: 39% Lachnospiraceae, 11% Ruminococcaceae, 11% Bacteroidaceae) relative to all gut regions. The common families in fecal samples made up < 1% of cloacal tissue samples, increasing to 43% at the upper intestine. Similarly, the common families in gut tissue (Enterobacteriaceae and Helicobacteraceae) made up < 1% of the fecal microbiome. Further, we found that cloacal swabs taken shortly after defecation may be contaminated with fecal matter. Our results serve as a caution against using feces as a proxy for GI microbes, and may help explain high between-sample variation seen in some studies using cloacal swabs. 

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3. Veiled preferences and cryptic female choice could underlie the origin of novel sexual traits

   https://doi.org/10.1098/rsbl.2018.0878  

   Moehring, Amanda J.; Boughman, Janette W. (February 2019, Biology Letters)

   Males in many species have elaborated sexual traits that females strongly prefer, and these traits often conspicuously differ among species. How novel preferences and traits originate, however, is a challenging evolutionary problem because the initial appearance of only the female preference or only the male trait should reduce the ability to find a suitable mate, which could reduce fitness for individuals possessing those novel alleles. Here, we present a hypothesis for how novel preferences, as well as the novel male traits that females prefer, can originate, be favoured and spread in polyandrous species. Novel preference mutations can arise as ‘veiled preferences’ that are not expressed when the corresponding male trait is not present in the population, allowing preferences to be hidden from selection, and thus persist. In those cases when a male trait is present, veiled preferences provide a selective advantage, and females disproportionately produce offspring from preferred males through either mate choice or cryptic female choice. This tips the fitness advantage for novel males, allowing both preference and trait to spread, and limiting selection against them in the absence of the corresponding trait or preference. 

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4. Facial Widths in the Three Adult Morphs of Orangutans

   Harwell, Faye S; Albert, Zoe A; Knott, Cheryl D. (November 2021, Northeastern Evolutionary Primatologists)

   Orangutans challenge our dichotomous perception of phenotypic sex seeing as they have three sexuallymature adult morphs: females, unflanged males, and flanged males. In males, a significant increase in androgen levels is associated with numerous changes in physical characteristics and behavior that develop during the flanging process. While unflanged males lack these obvious secondary sexual characteristics, they still have higher testosterone levels compared to females. Here, we test whether captive unflanged males and females have similar facial ratios (facial width/bi-orbital distance), since flanges form from a facial compartment that contains androgen receptors and is present prior to flanging. When flanging, males deposit fat to these compartments. In the field, unflanged males can be hard to distinguish from female orangutans, without a clear view of the genitalia. Flanged males (3.9 ± 0.5, range=2.7-5.1, N=20) have significantly wider facial ratios compared to unflanged males (2.4 ± 0.3, range=2.1-3.0, N=9) and females (2.3 ± 0.3, range=1.9-2.7, N=22; F(2,48)= 98.18, p-value >0.0001), who are similar in their facial ratios. Interobserver reliability between measurements (N=74) of the bi-orbital distance (V=1171, p=0.3251), facial width (V=1711, p=0.04779), and facial ratio (V=496.5, p=0.2434) are low. While there are other morphological differences between them, unflanged males and females do not differ in their facial ratios. The lack of significant differences in facial ratios between unflanged males and females, despite the higher testosterone levels in unflanged males, is consistent with them having an alternative 'sneaker' male reproductive strategy that includes mimicking female size and appearance. 

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5. Female choice and sexual coercion in wild orangutans (Pongo pygmaeus wurmbii)

   Scott, AM; Susanto, TW; Knott, CD (January 2020, 6th Annual Meeting of the Northeastern Evolutionary Primatologists)

   null (Ed.)

   Due to extreme incongruence in parental investment, the potential for sexual conflict in orangutan reproductive strategies is high. Female orangutans prefer flanged males, but with intense male-male competition and sexual coercion, it is unclear how females are able to exert choice. We hypothesized that female orangutans use initiation and maintenance of associations with preferred males as a mechanism of female choice. We used encounter rates and behavioral measures of proximity maintenance to distinguish between the role of female choice and male coercion in male-female associations in Gunung Palung National Park, West Kalimantan, Indonesia. From May 2018-April 2019, we collected data on initiation, termination, and proximity maintenance during associations between males and cycling females (females without dependent offspring or with offspring over 6 years old). Encounters between cycling females and flanged males were more likely to be female-initiated (83.3%), while encounters with unflanged males were more likely to be male-initiated (80%) (N=16, p=0.035, Fisher’s exact test). Additionally, the Brown Index indicates significantly more female proximity maintenance when cycling females associated with flanged males than unflanged males (N=33, W = 198.5, p= 0.012). However, using long-term data on male-female associations, we found that dyads of flanged males and females were less likely to encounter other males compared to dyads of unflanged males and females (N=542, χ2= 3.3051, df=1, p=0.035). This indicates that flanged males may also use associations to mate guard females. These data indicate that there are behavioral manifestations of both female choice and male coercion in orangutan associations. Funders: NSF (DGE-1247312, BCS-1638823, BCS-0936199), Boston University, Leakey Foundation, Disney Conservation Fund, and US Fish and Wildlife Service (F18AP00898) 

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