The formation of inorganic fine particulate matter (i.e., iPM2.5) is controlled by the thermodynamic equilibrium partitioning of NH3-NH4+. To develop effective control strategies of PM2.5, we aim to understand the impacts of changes in different precursor gases on iPM2.5 concentrations and partitioning of NH3-NH4+. To understand partitioning of NH3-NH4+ in the southeastern U.S., responses of iPM2.5 to precursor gases in four seasons were investigated using field measurements of iPM2.5, precursor gases, and meteorological conditions. The ISORROPIA II model was used to examine the effects of changes in total ammonia (gas + aerosol), total sulfuric acid (aerosol), and total nitric acid (gas + aerosol) on iPM2.5 concentrations and partitioning of NH3-NH4+. The results indicate that reduction in total H2SO4 is more effective than reduction in total HNO3 and total NH3 to reduce iPM2.5 especially under NH3-rich condition. The reduction in total H2SO4 may change partitioning of NH3-NH4+ towards gas-phase and may also lead to an increase in NO3− under NH3-rich conditions, which does not necessarily lead to full neutralization of acidic gases (pH < 7). Thus, future reduction in iPM2.5 may necessitate the coordinated reduction in both H2SO4 and HNO3 in the southeastern U.S. It is also found that the response of iPM2.5 to the change in total H2SO4 is more sensitive in summer than winter due to the dominance of SO42− salts in iPM2.5 and the high temperature in summer. The NH3 emissions from Animal Feeding Operations (AFOs) at an agricultural rural site (YRK) had great impacts on partitioning of NH3-NH4+. The Multiple Linear Regression (MLR) model revealed a strong positive correlation between cation-NH4+ and anions-SO42− and NO3−. This research provides an insight into iPM2.5 formation mechanism for the advancement of PM2.5 control and regulation in the southeastern U.S.
more »
« less
Chemical Speciation: Defining the Niche of Hot Spring Ammonia-Oxidizing Archaea (Oral Presentation)
The availability of chemical energy supplies is fundamental to environmental and planetary habitability. However, the presence of a chemical energy supply does not guarantee the presence of microorganisms capable of consuming it. In this study, chemical energy supplies available in Yellowstone National Park (YNP) hot springs were calculated, and the results indicate that ammonia oxidation, calculated using total dissolved ammonia, is one of the major energy supplies. Nevertheless, known ammonia-oxidizers (AO) are only present in a small fraction of the hot springs tested. Where AO are present, they do not dominate the microbial communities (relative abundances <5%), even in cases where total dissolved ammonia oxidation is the richest energy supply. The AO in YNP hot springs are predominantly ammonia-oxidizing archaea (AOA), which tend to favor environments with low total ammonia (sum of NH3 and NH4+) concentrations, despite the requirement of ammonia (NH3) as a substrate. Hot spring pH and temperature determine the ratio of NH3 to NH4+ and, consequently, NH3 availability to resident AOA. In this study, total ammonia measurements were collected from YNP hot spring samples using ion chromatography in coordination with biological sampling. DNA was extracted from simultaneously collected samples for 16S rRNA gene sequencing and analysis, and for the identification of known AOA. The WORM-portal (https://worm-portal.asu.edu/) was used to speciate the total ammonia measurements into ammonia and ammonium activities. By performing speciation calculations, we identified a potential lower limit for substrate (NH3) availability and a potential upper limit for NH4+ concentrations for the YNP hot spring AOA. Thus, the niche for AOA across YNP hot springs is dictated by the form of the total dissolved ammonia present, not by the energy supply available for total dissolved ammonia oxidation.
more »
« less
- Award ID(s):
- 2327807
- PAR ID:
- 10630500
- Publisher / Repository:
- Goldschmidt 2025 Conference
- Date Published:
- Format(s):
- Medium: X
- Location:
- Goldschmidt 2025, Prague, Czech Republic
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Soil ammonia (NH3) emissions are seldom included in ecosystem nutrient budgets; however, they may represent substantial pathways for ecosystem nitrogen (N) loss, especially in arid regions where hydrologic N losses are comparatively small. To characterize how multiple factors affect soil NH3 emissions, we measured NH3 losses from 6 dryland sites along a gradient in soil pH, atmospheric N deposition, and rainfall. We also enriched soils with ammonium (NH4+), to determine whether N availability would limit emissions, and measured NH3 emissions with passive samplers in soil chambers following experimental wetting. Because the volatilization of NH3 is sensitive to pH, we hypothesized that NH3 emissions would be higher in more alkaline soils and that they would increase with increasing NH4+ availability. Consistent with this hypothesis, average soil NH3 emissions were positively correlated with average site pH (R2 = 0.88, P = 0.004), ranging between 0.77 ± 0.81 µg N-NH3 m−2 h−1 at the least arid and most acidic site and 24.2 ± 16.0 µg N-NH3 m−2 h−1 at the most arid and alkaline site. Wetting soils while simultaneously adding NH4+ increased NH3 emissions from alkaline and moderately acidic soils (F1,35 = 14.7, P < 0.001), suggesting that high N availability can stimulate NH3 emissions even when pH is less than optimal for NH3 volatilization. Thus, both pH and N availability act as proximate controls over NH3 emissions suggesting that these N losses may limit how much N accumulates in arid ecosystems.more » « less
-
Abstract. As a key biogeochemical pathway in the marine nitrogen cycle, nitrification (ammonia oxidation and nitrite oxidation) converts the most reduced form of nitrogen – ammonium–ammonia (NH4+–NH3) – into the oxidized species nitrite (NO2-) and nitrate (NO3-). In the ocean, these processes are mainly performed by ammonia-oxidizing archaea (AOA) and bacteria (AOB) and nitrite-oxidizing bacteria (NOB). By transforming nitrogen speciation and providing substrates for nitrogen removal, nitrification affects microbial community structure; marine productivity (including chemoautotrophic carbon fixation); and the production of a powerful greenhouse gas, nitrous oxide (N2O). Nitrification is hypothesized to be regulated by temperature, oxygen, light, substrate concentration, substrate flux, pH and other environmental factors. Although the number of field observations from various oceanic regions has increased considerably over the last few decades, a global synthesis is lacking, and understanding how environmental factors control nitrification remains elusive. Therefore, we have compiled a database of nitrification rates and nitrifier abundance in the global ocean from published literature and unpublished datasets. This database includes 2393 and 1006 measurements of ammonia oxidation and nitrite oxidation rates and 2242 and 631 quantifications of ammonia oxidizers and nitrite oxidizers, respectively. This community effort confirms and enhances our understanding of the spatial distribution of nitrification and nitrifiers and their corresponding drivers such as the important role of substrate concentration in controlling nitrification rates and nitrifier abundance. Some conundrums are also revealed, including the inconsistent observations of light limitation and high rates of nitrite oxidation reported from anoxic waters. This database can be used to constrain the distribution of marine nitrification, to evaluate and improve biogeochemical models of nitrification, and to quantify the impact of nitrification on ecosystem functions like marine productivity and N2O production. This database additionally sets a baseline for comparison with future observations and guides future exploration (e.g., measurements in the poorly sampled regions such as the Indian Ocean and method comparison and/or standardization). The database is publicly available at the Zenodo repository: https://doi.org/10.5281/zenodo.8355912 (Tang et al., 2023).more » « less
-
NOTE: THIS MS IS STILL IN REVIEW: 8 OCTOBER, 2023. SUMMARY STATEMENT: Nitrification is a globally important biogeochemical process, helping to remove excess nitrogen from the biosphere. Thaumarchaeota are important contributors to ammonium oxidation, the first step in nitrification, especially in the ocean. A phylogenetic distinction between clades of marine Thaumarchaeota from shallow versus mesopelagic habitats emerged from the earliest analyses of sequence databases, yet the environmental factors driving these distributions, and their biogeochemical significance, are still debated. Steady-state ammonium concentrations are important determinants; however, environmental concentrations may fluctuate on short time scales, depending on localized coupling between production and consumption. Substrate pulses have been shown to inhibit the activity of Thaumarchaeota cultures via the accumulation of toxic intermediates. Here we provide field evidence that ammonia oxidation can be inhibited by ammonium amendments. We found greater inhibition with mesopelagic samples than with those from shallower water, potentially explaining the evolutionary divergence of marine Thaumarchaeota into deep- and shallow-water clades. Further, measurements of ammonium oxidation rates needed for biogeochemical models are typically made with substrate amendments that may yield artificially low rates, to 25% of the uninhibited rate, in mesopelagic samples. The inhibition also affects carbon fixation, which may thus be greater in the dark ocean than currently believed. ABSTRACT: Oxidation rates of N supplied as ammonium (AO) or urea (UO) by Thaumarchaeota-dominated nitrifying communities in samples of aerobic waters from continental shelf and slope waters of the Southern Ocean west of the Antarctic Peninsula were inhibited by substrate amendments in the low nM range. We found that the response varied consistently by water mass. Rates increased moderately (up to 2-fold) with 44 or 440 vs 6 nM NH4+ amendments to samples from the Winter Water (sampled at 70-80 m), but decreased (down to 7%) in samples from the Circumpolar Deep Water (400-600 m). AO rates decreased more than UO rates. Cell-specific AO rates were lower in CDW samples than in WW samples and chemoautotrophic carbon fixation was also inhibited by NH4+ amendments. We identified similar responses to substrate amendments in data collected elsewhere by others, indicating that inhibition of AO, and to a lesser extent UO, by substrate pulses may be a general phenomenon. Current estimates of nitrification in the epipelagic zone may be ~2-fold greater than in situ, while estimates for the mesopelagic may be ~25% of in situ. Our data suggest that differential adaptation to fluctuating resources may be the basis for the divergence of epipelagic and mesopelagic Thaumarchaeota ecotypes.more » « less
-
Fukami, Tadashi (Ed.)The oxidation of sulfur compounds drives the acidification of geothermal waters. At high temperatures (>80°C) and in acidic conditions (pH <6.0), oxidation of sulfide has historically been considered an abiotic process that generates elemental sulfur (S0) that, in turn, is oxidized by thermoacidophiles of the model archaeal order Sulfolobales to generate sulfuric acid (i.e. sulfate and protons). Here, we describe five new aerobic and autotrophic strains of Sulfolobales comprising two species that were isolated from acidic hot springs in Yellowstone National Park (YNP) and that can use sulfide as an electron donor. These strains significantly accelerated the rate and extent of sulfide oxidation to sulfate relative to abiotic controls, concomitant with production of cells. Yields of sulfide-grown cultures were ∼2-fold greater than those of S0-grown cultures, consistent with thermodynamic calculations indicating more available energy in the former condition than the latter. Homologs of sulfide:quinone oxidoreductase (Sqr) were identified in nearly all Sulfolobales genomes from YNP metagenomes as well as those from other reference Sulfolobales, suggesting a widespread ability to accelerate sulfide oxidation. These observations expand the role of Sulfolobales in the oxidative sulfur cycle, the geobiological feedbacks that drive the formation of acidic hot springs, and landscape evolution.more » « less
An official website of the United States government

