Abstract Rafflesiaceae is a family of endangered plants whose members are solely parasitic to the tropical grape vineTetrastigma(Vitaceae). Currently, the genetics of their crosstalk with the host remains unexplored. In this study, we use homology-basedin silicoapproaches to characterize micro-RNAs (miRNAs) expressed bySapria himalayanaandRafflesia cantleyifrom published omics data. Derived from secondary structures or hairpins, miRNAs are small regulators of gene expression. We found that some plant-conserved miRNA still exists in Rafflesiaceae. Out of 9 highly conserved miRNA families in plants, 7 families (156/157, 159/319, 160, 165/166, 171, 172, 390) were identified with a total of 22 variants across Rafflesiaceae. Some miRNAs were missing endogenous targets and may have evolved to target host miRNA, though this requires experimental verification. Rafflesiaceae miRNA promoters are mostly inducible by ethylene that mediates stress response in the host but could be perceived by the parasites as a signal for growth. This study provides evidence that certain miRNAs with ancient origins in land plants still exist in Rafflesiaceae, though some may have been coopted by parasites to target host genes.
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Small Nucleolar Derived RNAs as Regulators of Human Cancer
In the past decade, RNA fragments derived from full-length small nucleolar RNAs (snoRNAs) have been shown to be specifically excised and functional. These sno-derived RNAs (sdRNAs) have been implicated as gene regulators in a multitude of cancers, controlling a variety of genes post-transcriptionally via association with the RNA-induced silencing complex (RISC). In this review, we have summarized the literature connecting sdRNAs to cancer gene regulation. SdRNAs possess miRNA-like functions and are able to fill the role of tumor-suppressing or tumor-promoting RNAs in a tissue context-dependent manner. Indeed, there are many miRNAs that are actually derived from snoRNA transcripts, meaning that they are truly sdRNAs and as such are included in this review. As sdRNAs are frequently discarded from ncRNA analyses, we emphasize that sdRNAs are functionally relevant gene regulators and likely represent an overlooked subclass of miRNAs. Based on the evidence provided by the papers reviewed here, we propose that sdRNAs deserve more extensive study to better understand their underlying biology and to identify previously overlooked biomarkers and therapeutic targets for a multitude of human cancers.
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- Award ID(s):
- 2030080
- PAR ID:
- 10635018
- Publisher / Repository:
- MDPI
- Date Published:
- Journal Name:
- Biomedicines
- Volume:
- 10
- Issue:
- 8
- ISSN:
- 2227-9059
- Page Range / eLocation ID:
- 1819
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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