Etisine crabs are some of the most abundant cryptobionts in Indo-West Pacific coral reef systems. Despite their ecological importance and abundance in museum collections, several recent systematic studies have indicated family- to subspecies-level taxonomic problems. One such case involves the former chlorodielline genus Soliella Lasley, Klaus & Ng, 2015 (treated here as part of Etisinae), which currently comprises two valid species and three available names that have been in flux in recent literature. The validity of these taxa has only been cursorily discussed. To resolve species limits and distributions, a thorough morphological examination of hundreds of specimens was conducted, including scanning electron microscopy of male gonopods, along with analysis of sequence data of the mitochondrial marker cytochrome c oxidase subunit I (COI) from 84 exemplars across the distribution of the genus. The status of two species that have Indian Ocean versus Pacific Ocean distributions with overlap in the Indo-Australian Archipelago and adjacent regions is confirmed. While external morphology is not reliable for identification, a few discrete, although slight, differences in gonopod morphology were found, and these results are consistent with a “pseudocryptic species” designation. Speciation conforms to a previously published etisine model of allopatric differentiation followed by subsequent divergence of gonopod morphology upon secondary sympatry. This pattern, the biogeography of the two species, and the term “pseudocryptic species” are discussed.
more »
« less
Biodiversity and biogeography of zooxanthellate soft corals across the Indo-Pacific
Documentation of biodiversity and its geographical distribution is necessary to understand the processes and drivers of evolutionary diversification as well as to guide conservation and management initiatives. Among the most emblematic patterns of biodiversity in the world’s oceans is the Coral Triangle (Indo-Australian Archipelago), widely recognized to be the center of species richness for a variety of marine life forms. The distribution of biodiversity remains incompletely documented, however, for a majority of reef-associated invertebrate taxa, including the zooxanthellate soft corals (Octocorallia) that dominate hard substrate on many Indo-Pacific reefs. We used a genetic approach to document the diversity of Indo-Pacific soft corals, sequencing two single-locus barcoding markers for > 4400 soft coral specimens and assigning individuals to molecular operational taxonomic units as proxies of species. We document two centers of species richness for zooxanthellate soft corals, one in the Indo-Australian Archipelago and a second, equally diverse center in the Western Indian Ocean. Centers of endemicity for soft corals are coincident with these centers of species richness, although the peripheral Red Sea and Hawaii also support high proportions of endemic taxa. The patterns documented here suggest that biogeographic distributions of soft coral families may be driven in part by larval dispersal potential: taxa with benthic larvae are absent from most oceanic islands of the central Pacific and are represented by higher proportions of endemic taxa in other geographic regions. Our findings demonstrate the distinct biogeographic patterns among reef taxa and underscore the need to document and analyze species distributions of more reef-associated invertebrate groups to derive a complete picture of reef biogeography.
more »
« less
- PAR ID:
- 10639676
- Author(s) / Creator(s):
- ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; more »
- Publisher / Repository:
- Nature Portfolio
- Date Published:
- Journal Name:
- Scientific Reports
- Volume:
- 15
- Issue:
- 1
- ISSN:
- 2045-2322
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
ABSTRACT AimThe Indo‐Australian Archipelago (IAA) is one of the most geologically complex and species‐rich regions on Earth. However, our knowledge of the geological processes and dispersal mechanisms that generate archipelago‐wide distributions across the IAA is limited to a few vertebrate groups and often solely attributed to Plio‐Pleistocene sea‐level fluctuations. In this study, we use phylogenomics‐based analyses to investigate two speciose and closely related genera of snakes,LycodonandStegonotus(Serpentes: Colubridae), which are widely distributed across the IAA to identify which biogeographic and environmental processes have shaped snake diversity in this region. LocationSouth Asia and the Indo‐Australian Archipelago (Indochina, Sundaland, Philippines, Wallacea, Australasia). TaxonSnakes (Colubridae:Lycodon, Stegonotus). MethodsWe inferred a phylogeny using a genomic dataset consisting of ultraconserved elements, anchored hybrid enrichment loci, and protein‐coding genes (~5400 nuclear loci) from 38 species (154 samples) ofLycodonandStegonotus. We used ancestral range estimation analysis to identify dispersal patterns across the IAA. Additionally, we implemented ensemble species distribution models to identify potential hotspots ofLycodonandStegonotusspecies richness and determined the environmental influence on geographic distributions and species diversity. ResultsWe find that these snakes comprise six deeply divergent lineages (genera) that initially originated in Mainland Southeast Asia during the Oligocene. Diversification of these lineages is influenced not by Plio‐Pleistocene sea‐level fluctuations but by multiple historical processes, including in situ diversification, island hopping, long‐distance rafting, possible microcontinental block drifting, Cenozoic land bridge migrations and founder events. The species distribution models do not consistently estimate lower or higher species richness in any particular region within the IAA, but precipitation overall is considered an important factor in estimated species richness. Main ConclusionAlthough Plio‐Pleistocene sea‐level fluctuations are notorious species pump diversification paradigms in the IAA, multiple and more ancient geological processes and environmental factors contributed to current diversity levels and distributions. Our approach expands future investigations of alternative hypotheses of biodiversity sources in the IAA and greatly expands the diversity of causal mechanisms for discussions of terrestrial Southeast Asian biodiversity beyond dispersal versus vicariance hypotheses.more » « less
-
Abstract Scleractinian corals are the main modern builders of coral reefs, which are major hot spots of marine biodiversity. Southern Atlantic reef corals are understudied compared to their Caribbean and Indo‐Pacific counterparts and many hypotheses about their population dynamics demand further testing. We employed thousands of single nucleotide polymorphisms (SNPs) recovered via ezRAD to characterize genetic population structuring and species boundaries in the amphi‐Atlantic hard coral genusFavia. Coalescent‐based species delimitation (BFD* – Bayes Factor Delimitation) recoveredF. fragumandF. gravidaas separate species. Although our results agree with depth‐related genetic structuring inF. fragum, they did not support incipient speciation of the ‘tall’ and ‘short’ morphotypes. The preferred scenario also revealed a split between two main lineages ofF. gravida, one from Ascension Island and the other from Brazil. The Brazilian lineage is further divided into a species that occurs throughout the Northeastern coast and another that ranges from the Abrolhos Archipelago to the state of Espírito Santo. BFD* scenarios were corroborated by analyses of SNP matrices with varying levels of missing data and by a speciation‐based delimitation approach (DELINEATE). Our results challenge current notions about Atlantic reef corals because they uncovered surprising genetic diversity inFaviaand rejected the long‐standing hypothesis that Abrolhos Archipelago may have served as a Pleistocenic refuge during the last glaciations.more » « less
-
Local habitat availability can strongly affect animal communities. On coral reefs, the biodiversity of small, bottom-dwelling (‘cryptobenthic’) reef fishes and drivers of their community assembly have yet to be explored in many locations. Here, we investigate how local and regional factors shape the structure and composition of cryptobenthic reef fish communities in the Veracruz Reef System National Park (VRS) in the Gulf of Mexico (GoM). Focusing on five reefs in the VRS, we surveyed cryptobenthic reef fish communities at scales of reef outcrops (~ 3–5 m2) and isolated microhabitats, while also quantifying the benthic composition of each reef to determine microhabitat availability. We found no significant differences in species richness or abundance across park regions and reef zones, but community composition differed qualitatively across reef zones. Furthermore, we discovered strong differences in cryptobenthic reef fishes’ preferences for various microhabitats, which are likely to drive community assembly and provide evidence for species-specific vulnerabilities to reef degradation. Caves harbored the highest biodiversity and abundance of cryptobenthic fishes, while gorgonian soft corals and algae supported the fewest species and individuals. The endemic gobies Tigrigobius redimiculus and Elacatinus jarocho both showed high abundance and occurrence but displayed opposite patterns of microhabitat specialization; T. redimiculus was categorized as a microhabitat generalist, while E. jarocho was revealed as a cave-dwelling specialist species. Overall, our quantitative exploration of the cryptobenthic reef fish community in the southwest GoM provides a crucial baseline for habitat and biodiversity monitoring in the region and highlights E. jarocho as an emblematic, endemic indicator species that will be vulnerable to extinction if further reduction of habitat complexity occurs.more » « less
-
Without drastic efforts to reduce carbon emissions and mitigate globalized stressors, tropical coral reefs are in jeopardy. Strategic conservation and management requires identification of the environmental and socioeconomic factors driving the persistence of scleractinian coral assemblages—the foundation species of coral reef ecosystems. Here, we compiled coral abundance data from 2,584 Indo-Pacific reefs to evaluate the influence of 21 climate, social and environmental drivers on the ecology of reef coral assemblages. Higher abundances of framework-building corals were typically associated with: weaker thermal disturbances and longer intervals for potential recovery; slower human population growth; reduced access by human settlements and markets; and less nearby agriculture. We therefore propose a framework of three management strategies (protect, recover or transform) by considering: (1) if reefs were above or below a proposed threshold of >10% cover of the coral taxa important for structural complexity and carbonate production; and (2) reef exposure to severe thermal stress during the 2014–2017 global coral bleach- ing event. Our findings can guide urgent management efforts for coral reefs, by identifying key threats across multiple scales and strategic policy priorities that might sustain a network of functioning reefs in the Indo-Pacific to avoid ecosystem collapse.more » « less
An official website of the United States government

