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1. Replayed reef sounds induce settlement of Favia fragum coral larvae in aquaria and field environments

   https://doi.org/10.1121/10.0032407  

   Aoki, Nadège; Weiss, Benjamin; Jézéquel, Youenn; Apprill, Amy; Mooney, T Aran (October 2024, JASA Express Letters)

   Freeman, L (Ed.)

   Acoustic cues of healthy reefs are known to support critical settlement behaviors for one reef-building coral, but acoustic responses have not been demonstrated in additional species. Settlement of Favia fragum larvae in response to replayed coral reef soundscapes were observed by exposing larvae in aquaria and reef settings to playback sound treatments for 24–72 h. Settlement increased under 24 h sound treatments in both experiments. The results add to growing knowledge that acoustically mediated settlement may be widespread among stony corals with species-specific attributes, suggesting sound could be one tool employed to rehabilitate and build resilience within imperiled reef communities. 

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2. Ramicrusta invasive alga causes mortality in Caribbean coral larvae

   https://doi.org/10.3389/fmars.2023.1158947  

   Cayemitte, Kayla; Aoki, Nadège; Ferguson, Sophie R; Mooney, T Aran; Apprill, Amy (April 2023, Frontiers in Marine Science)

   The settlement of coral larvae is an important process which contributes to the success and longevity of coral reefs. Coral larvae often recruit to benthic structures covered with crustose coralline algae (CCA) which produce cues that promote settlement and metamorphosis. The PeysonneliaceaeRamicrustaspp. are red-brown encrusting alga that have recently become abundant on shallow Caribbean reefs, replacing CCA habitat, overgrowing corals and potentially threatening coral recruitment. In order to assess the threat ofRamicrustato coral recruitment, we compared the survival and settlement ofPorites astreoidesandFavia fragumlarvae to 0.5 – 2 mg ml^-1solutions ofRamicrustasp. or CCA as well as sterile seawater (control). In all cases larval mortality was extremely high in theRamicrustatreatments compared to the CCA and control treatments. We found 96% (± 8.9% standard deviation, SD) mortality ofP. astreoideslarvae when exposed to solutions ofRamicrustaand 0 - 4% (± 0 - 8.9% SD) mortality in the CCA treatments. We observed 100%F. fragumlarval mortality when exposed toRamicrustaand 5 – 10% (± 10 – 20% SD) mortality in the CCA treatments. Settlement or surface interaction of larvae in the CCA treatments was 40 - 68% (± 22 - 37% SD) forP. astreoidesand 65 - 75% (± 10 - 19% SD) forF. fragum. TwoP. astreoideslarva that survivedRamicrustaexposure did settle/surface interact, suggesting that some larvae may be tolerant toRamicrusta. These results suggest thatRamicrustais a lethal threat to Caribbean coral recruitment. 

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3. Population Genetics to Population Genomics: Revisiting Multispecies Connectivity of the Hawaiian Archipelago

   https://doi.org/10.3390/fishes10120623  

   Freel, Evan B; Conklin, Emily E; Knapp, Ingrid_S S; Kraft, Derek W; Johnston, Erika C; Forsman, Zac H; Coleman, Richard R; Whitney, Jonathan L; Iacchei, Matthew J; Bowen, Brian W; et al (December 2025, Fishes)

   Understanding connectivity between populations is key to identifying hotspots of diversity, dispersal sinks and sources, and effective management units for natural resources. Multi-species connectivity seeks to overcome species-specific idiosyncrasies to identify shared patterns that are most critical to spatial management. The linear Hawaiian archipelago provides an excellent platform to assess multi-species connectivity patterns, with shared boundaries to gene flow identified across a majority of the 41 coral reef species surveyed to date. Here, we evaluate genome-scale data by comparing consistency and resolution to previous connectivity studies using far fewer loci. We used pool-seq to genotype 22,503–232,730 single nucleotide polymorphisms per species (625,215 SNPs total) from the same individuals published in previous studies of two fishes, two corals, and two lobsters. Additionally, one coral species (Pocillopora meandrina) without previous archipelago-wide population genetic data was included. With greater statistical power, most genetic differences between pairwise comparisons of islands were significant (250 of 308), consistent with the most recent larval dispersal models for the Hawaiian Archipelago. These data reveal significant differentiation at a finer scale than previously reported using single-marker studies, yet did not overturn any of the conclusions or management implications drawn from previous studies. We confirm that population genomic datasets are consistent with previously reported patterns of multispecies connectivity but add a finer layer of population resolution that is pertinent to management. 

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4. Phylogeography and cohesion species delimitation of California endemic trapdoor spiders within the Aptostichus icenoglei sibling species complex (Araneae: Mygalomorphae: Euctenizidae)

   https://doi.org/10.1002/ece3.10025  

   Newton, Lacie G.; Starrett, James; Jochim, Emma E.; Bond, Jason E. (April 2023, Ecology and Evolution)

   Abstract Species delimitation is an imperative first step toward understanding Earth's biodiversity, yet what constitutes a species and the relative importance of the various processes by which new species arise continue to be debatable. Species delimitation in spiders has traditionally used morphological characters; however, certain mygalomorph spiders exhibit morphological homogeneity despite long periods of population‐level isolation, absence of gene flow, and consequent high degrees of molecular divergence. Studies have shown strong geographic structuring and significant genetic divergence among several species complexes within the trapdoor spider genusAptostichus, most of which are restricted to the California Floristic Province (CAFP) biodiversity hotspot. Specifically, theAptostichus icenogleicomplex, which comprises the three sibling species,A. barackobamai,A. isabella, andA. icenoglei, exhibits evidence of cryptic mitochondrial DNA diversity throughout their ranges in Northern, Central, and Southern California. Our study aimed to explicitly test species hypotheses within this assemblage by implementing a cohesion species‐based approach. We used genomic‐scale data (ultraconserved elements, UCEs) to first evaluate genetic exchangeability and then assessed ecological interchangeability of genetic lineages. Biogeographical analysis was used to assess the likelihood of dispersal versus vicariance events that may have influenced speciation pattern and process across the CAFP's complex geologic and topographic landscape. Considering the lack of congruence across data types and analyses, we take a more conservative approach by retaining species boundaries withinA. icenoglei. 

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5. Biodiversity and biogeography of zooxanthellate soft corals across the Indo-Pacific

   https://doi.org/10.1038/s41598-025-98790-7  

   McFadden, Catherine S; Erickson, Katie L; Lane, Audra; Nassongole, Bibiana; Aguilar, Steven; Dunakey, Sabra K; Durkin, Kathleen M; Lalas, Jue_A A; Kushida, Yuka; Macrina, Laura; et al (May 2025, Scientific Reports)

   Documentation of biodiversity and its geographical distribution is necessary to understand the processes and drivers of evolutionary diversification as well as to guide conservation and management initiatives. Among the most emblematic patterns of biodiversity in the world’s oceans is the Coral Triangle (Indo-Australian Archipelago), widely recognized to be the center of species richness for a variety of marine life forms. The distribution of biodiversity remains incompletely documented, however, for a majority of reef-associated invertebrate taxa, including the zooxanthellate soft corals (Octocorallia) that dominate hard substrate on many Indo-Pacific reefs. We used a genetic approach to document the diversity of Indo-Pacific soft corals, sequencing two single-locus barcoding markers for > 4400 soft coral specimens and assigning individuals to molecular operational taxonomic units as proxies of species. We document two centers of species richness for zooxanthellate soft corals, one in the Indo-Australian Archipelago and a second, equally diverse center in the Western Indian Ocean. Centers of endemicity for soft corals are coincident with these centers of species richness, although the peripheral Red Sea and Hawaii also support high proportions of endemic taxa. The patterns documented here suggest that biogeographic distributions of soft coral families may be driven in part by larval dispersal potential: taxa with benthic larvae are absent from most oceanic islands of the central Pacific and are represented by higher proportions of endemic taxa in other geographic regions. Our findings demonstrate the distinct biogeographic patterns among reef taxa and underscore the need to document and analyze species distributions of more reef-associated invertebrate groups to derive a complete picture of reef biogeography. 

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