skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.
Attention:The NSF Public Access Repository (NSF-PAR) system and access will be unavailable from 7:00 AM ET to 7:30 AM ET on Friday, April 24 due to maintenance. We apologize for the inconvenience.


Title: Early birds and night owls: natural variation of circadian traits in plants
Abstract Circadian clocks have long been hypothesized to tightly link cellular and physiological processes to the appropriate time within the 24-hour cycle of the Earth’s daily rotation. According to this hypothesis, circadian rhythms with cycle lengths that differ significantly from 24 hours would be disadvantageous, as they would generate a desynchronization between the endogenous and exogenous cycles that would place stress upon an organism through the required daily resetting at dawn. However, recent work has demonstrated that endogenous circadian cycles that differ from 24 hours by 2 hours or more are prevalent within the green lineage. Herein, we review recent work on the prevalence of, and adaptive advantages associated with, natural variation in circadian cycles. Based on known photoperiodic sensing mechanisms we also describe a set of principles that allow the same changes in circadian period to cause different plant responses. This fine-tuning of clock output pathways provides a flexible mechanism enabling plants to use a wide range of life history strategies for plant adaptation to different environmental niches. Further studies are needed to determine how variations of the clock and other signals are integrated in different plants. These studies highlight the circadian clocks’ position as a prime adaptation target for migration of plant species into new environmental ranges.  more » « less
Award ID(s):
1950376
PAR ID:
10670831
Author(s) / Creator(s):
;
Editor(s):
Lunn, John
Publisher / Repository:
Oxford Academic
Date Published:
Journal Name:
Journal of Experimental Botany
ISSN:
0022-0957
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. SUMMARY Daily rhythms in physiology are obvious and widespread. While for millennia it was thought that these cycles represent passive responses to environmental cycles, we now recognize that many of them are governed by circadian oscillators. In plants, these cell‐autonomous oscillators regulate daily processes such as photosynthesis, organ growth, and hormone production, as well as seasonal transitions like flowering. Furthermore, the circadian system gates plant responses to biotic and abiotic stresses, modulating susceptibility to pathogens and environmental extremes in a time‐of‐day‐dependent manner. Variants of circadian clock genes have been repeatedly selected during crop domestication and improvement, highlighting the importance of the circadian system to plants and its relevance for agriculture. Here, I review the history of circadian studies in plants and summarize our current understanding of the molecular nature of the circadian oscillator. I also discuss how this complex network both responds to and is buffered against changes in the environment. Next, I examine how circadian oscillators differ between various tissues and how their activities are coordinated throughout the plant body. Finally, I discuss emerging directions, such as ways in which this understanding can be applied to crop improvement in the face of climate change. 
    more » « less
  2. The circadian clock in mammals regulates the sleep/wake cycle and many associated behavioral and physiological processes. The cellular clock mechanism involves a transcriptional negative feedback loop that gives rise to circadian rhythms in gene expression with an approximately 24-hour periodicity. To maintain system robustness, clocks throughout the body must be synchronized and their functions coordinated. In mammals, the master clock is located in the suprachiasmatic nucleus (SCN) of the hypothalamus. The SCN is entrained to the light/dark cycle through photic signal transduction and subsequent induction of core clock gene expression. The SCN in turn relays the time-of-day information to clocks in peripheral tissues. While the SCN is highly responsive to photic cues, peripheral clocks are more sensitive to non-photic resetting cues such as nutrients, body temperature, and neuroendocrine hormones. For example, feeding/fasting and physical activity can entrain peripheral clocks through signaling pathways and subsequent regulation of core clock genes and proteins. As such, timing of food intake and physical activity matters. In an ideal world, the sleep/wake and feeding/fasting cycles are synchronized to the light/dark cycle. However, asynchronous environmental cues, such as those experienced by shift workers and frequent travelers, often lead to misalignment between the master and peripheral clocks. Emerging evidence suggests that the resulting circadian disruption is associated with various diseases and chronic conditions that further circadian desynchrony and accelerate disease progression. In this review, we discuss how sleep, nutrition, and physical activity synchronize circadian clocks and how chronomedicine may offer novel strategies for disease intervention. 
    more » « less
  3. Many living organisms track the 24-hour cycle of day and night via collections of proteins and other molecules that together act like an internal clock. These clocks, also known as circadian clocks, help these organisms to predict regular changes in their environment, like light and temperature, and adjust their activities according to the time of day. Plants use circadian clocks to predict, for example, when dawn will occur and get ready to harness sunlight to fuel their growth. A plant called Arabidopsis thaliana has a light-sensitive protein called ZEITLUPE (or ZTL for short) that helps it keep its circadian clock in sync with the cycle of night and day. Previous studies have shown that light activates this protein causing part of it to change shape and then revert back after a period of about an hour and a half. However, it was unclear if this timing was important for ZEITLUPE to allow plants to keep track of time. To help answer this question, Pudasaini et al. set out to identify a specific chemical event behind ZEITLUPE’s changes in shape. A chemical bond forms when light activates ZEITLUPE, and it turns out that how long this bond lasts before it breaks plays an important role in allowing plants to maintain a 24-hour circadian clock. This chemical bond controls the shape changes that guide the protein’s activities and, when Pudasaini et al. modified ZEITLUPE so that it took much longer for this bond to break, they could tune how fast the plant’s internal clocks run. In essence, the time between the bond forming and breaking breaks acts like a countdown on a stopwatch, and it must be precisely timed to keep the clock in pace with the environment. These findings improve our understanding of how light can regulate an internal biological clock. This improved understanding could, in the future, allow researchers to manipulate how plants and other organisms respond to their environment. This in turn could change how these organisms develop, and how much they grow. As such, extending these findings into agricultural crops may one day lead to new ways to increase crop yields. 
    more » « less
  4. Pinter-Wollman, Noa (Ed.)
    Abstract Circadian rhythms are ubiquitous in nature and endogenous circadian clocks drive the daily expression of many fitness-related behaviors. However, little is known about whether such traits are targets of selection imposed by natural enemies. In Hawaiian populations of the nocturnally active Pacific field cricket (Teleogryllus oceanicus), males sing to attract mates, yet sexually selected singing rhythms are also subject to natural selection from the acoustically orienting and deadly parasitoid fly, Ormia ochracea. Here, we use T. oceanicus to test whether singing rhythms are endogenous and scheduled by circadian clocks, making them possible targets of selection imposed by flies. We also develop a novel audio-to-circadian analysis pipeline, capable of extracting useful parameters from which to train machine learning algorithms and process large quantities of audio data. Singing rhythms fulfilled all criteria for endogenous circadian clock control, including being driven by photoschedule, self-sustained periodicity of approximately 24 h, and being robust to variation in temperature. Furthermore, singing rhythms varied across individuals, which might suggest genetic variation on which natural and sexual selection pressures can act. Sexual signals and ornaments are well-known targets of selection by natural enemies, but our findings indicate that the circadian timing of those traits’ expression may also determine fitness. 
    more » « less
  5. Abstract Circadian clocks confer adaptation to predictable 24‐h fluctuations in the exogenous environment, but it has yet to be determined what ecological factors maintain natural genetic variation in endogenous circadian period outside of the hypothesized optimum of 24 h. We estimated quantitative genetic variation in circadian period in leaf movement in 30 natural populations of theArabidopsisrelativeBoechera strictasampled within only 1° of latitude but across an elevation gradient spanning 2460–3300 m in the Rocky Mountains. Measuring ~3800 plants from 473 maternal families (7–20 per population), we found that genetic variation was of similar magnitude among versus within populations, with population means varying between 21.9 and 24.9 h and maternal family means within populations varying by up to ~6 h. After statistically accounting for spatial autocorrelation at a habitat extreme, we found that elevation explained a significant proportion of genetic variation in the circadian period, such that higher‐elevation populations had shorter mean period lengths and reduced intrapopulation ranges. Environmental data indicate that these spatial trends could be related to steep regional climatic gradients in temperature, precipitation, and their intra‐annual variability. Our findings suggest that spatially fine‐grained environmental heterogeneity contributes to naturally occurring genetic variation in circadian traits in wild populations. 
    more » « less