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Stream processing, which involves real-time computation of data as it is created or received, is vital for various applications, specifically wireless communication. The evolving protocols, the requirement for high-throughput, and the challenges of handling diverse processing patterns make it demanding. Traditional platforms grapple with meeting real-time throughput and latency requirements due to large data volume, sequential and indeterministic data arrival, and variable data rates, leading to inefficiencies in memory access and parallel processing. We present Canalis, a throughput-optimized framework designed to address these challenges, ensuring high-performance while achieving low energy consumption. Canalis is a hardware-software co-designed system. It includes a programmable spatial architecture, Flux Stream Processing Unit (FluxSPU), proposed by this work to enhance data throughput and energy efficiency. FluxSPU is accompanied by a software stack that eases the programming process. We evaluated Canalis with eight distinct benchmarks. When compared to CPU and GPU in mobile SoC to demonstrate the effectiveness of domain specialization, Canalis achieves an average speedup of 13.4\(\times\)and 6.6\(\times\), and energy savings of 189.8\(\times\)and 283.9\(\times\), respectively. In contrast to equivalent ASICs of the benchmarks, the average energy overhead of Canalis is within 2.4\(\times\), successfully maintaining generalizations without incurring significant overhead. 

Each fall, millions of monarch butterflies across the northern US and Canada migrate up to 4,000km to overwinter in specific mountain peaks in central Mexico. To track monarchs precisely and study their navigation, a monarch tracker must obtain daily localization of the butterfly as it progresses on its three-month journey. And, the tracker must perform this task while having a weight in the tens of milligrams (mg) and measuring a few millimeters (mm) in size to avoid interfering with the monarch's flight. This paper proposes mSAIL, 8 × 8 × 2.6mm and 62mg embedded system for monarch migration tracking, constructed using 8 prior custom-designed ICs providing solar energy harvesting, an ultra-low power processor, light/temperature sensors, power management, and a wireless transceiver, all integrated and 3D stacked on a micro PCB with an 8 × 8mm printed antenna. The proposed system is designed to record and compress light and temperature data during the migration path while harvesting solar energy for energy autonomy, and wirelessly transmit the data at the overwintering site in Mexico, from which the daily location of the butterfly can be estimated using a deep learning-based localization algorithm. A two-day trial experiment of mSAIL attached to a live butterfly in an outdoor botanical garden demonstrates the feasibility of individual butterfly localization and tracking. 

Abstract Molecular markers are essential for cancer diagnosis, clinical trial enrollment, and some surgical decision making, motivating ultra-rapid, intraoperative variant detection. Sequencing-based detection is considered the gold standard approach, but typically takes hours to perform due to time-consuming DNA extraction, targeted amplification, and library preparation times. In this work, we present a proof-of-principle approach for sub-1 hour targeted variant detection using real-time DNA sequencers. By modifying existing protocols, optimizing for diagnostic time-to-result, we demonstrate confirmation of a hot-spot mutation from tumor tissue in ~52 minutes. To further reduce time, we explore rapid, targeted Loop-mediated Isothermal Amplification (LAMP) and design a bioinformatics tool—LAMPrey—to process sequenced LAMP product. LAMPrey’s concatemer aware alignment algorithm is designed to maximize recovery of diagnostically relevant information leading to a more rapid detection versus standard read alignment approaches. Using LAMPrey, we demonstrate confirmation of a hot-spot mutation (250x support) from tumor tissue in less than 30 minutes. 

Abstract Objective . Brain–machine interfaces (BMIs) have the potential to restore motor function but are currently limited by electrode count and long-term recording stability. These challenges may be solved through the use of free-floating ‘motes’ which wirelessly transmit recorded neural signals, if power consumption can be kept within safe levels when scaling to thousands of motes. Here, we evaluated a pulse-interval modulation (PIM) communication scheme for infrared (IR)-based motes that aims to reduce the wireless data rate and system power consumption. Approach . To test PIM’s ability to efficiently communicate neural information, we simulated the communication scheme in a real-time closed-loop BMI with non-human primates. Additionally, we performed circuit simulations of an IR-based 1000-mote system to calculate communication accuracy and total power consumption. Main results . We found that PIM at 1 kb/s per channel maintained strong correlations with true firing rate and matched online BMI performance of a traditional wired system. Closed-loop BMI tests suggest that lags as small as 30 ms can have significant performance effects. Finally, unlike other IR communication schemes, PIM is feasible in terms of power, and neural data can accurately be recovered on a receiver using 3 mW for 1000 channels. Significance. These results suggest that PIM-based communication could significantly reduce power usage of wireless motes to enable higher channel-counts for high-performance BMIs.