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This work investigates the effect of molecular flexibility on fundamental ligand substitution kinetics in a pair of manganese( i ) carbonyls supported by scaffold-based ligands. In previous work, we reported that the planar and rigid, anthracene-based scaffold with two pyridine ‘arms’ ( Anth-py 2 , 2) serves as a bidentate, cis donor set, akin to a strained bipyridine (bpy). In the present work, we have installed a more flexible and dynamic scaffold in the form of thianthrene ( Thianth-py 2 , 1), wherein the scaffold in the free ligand exhibits a ∼130° dihedral angle in the solid state. Thianth-py 2 also exhibits greater flexibility (molecular motion) in solution compared with Anth-py 2 , as evidenced by longer 1 H NMR T 1 times Thianthy-py 2 ( T 1 = 2.97 s) versus Anth-py 2 ( T 1 = 1.91 s). Despite the exchange of rigid Anth-py2 for flexible Thianth-py2 in the complexes [( Anth-py 2 )Mn(CO) 3 Br] (4) and [( Thianth-py 2 )Mn(CO) 3 Br] (3), respectively, nearly identical electronic structures and electron densities were observed at the Mn center: the IR of 3 exhibits features at 2026, 1938 and 1900 cm −1 , nearly identical to the features of the anthracene-based congener (4) at 2027, 1936 and 1888 cm −1 . Most importantly, we assessed the effect of ligand-scaffold flexibility on reactivity and measured the rates of an elementary ligand substitution reaction. For ease of IR study, the corresponding halide-abstracted, nitrile-bound (PhCN) cations [( Thianth-py 2 )Mn(CO) 3 (PhCN)](BF 4 ) (6) and [( Anth-py 2 )Mn(CO) 3 (PhCN)](BF 4 ) (8) were generated in situ , and the PhCN → Br – back-reaction was monitored. The more flexible 3 (thianth-based) exhibited ∼3–4× faster ligand substitution kinetics ( k 25 C = 22 × 10 −2 min −1 , k 0 C = 43 × 10 −3 min −1 ) than the rigid analogue 4 (anth-based: ( k 25 C = 6.0 × 10 −2 min −1 , k 0 C = 9.0 × 10 −3 min −1 ) on all counts. Constrained angle DFT calculations revealed that despite large changes in the thianthrene scaffold dihedral angle, the bond metrics of 3 about the metal center remain unchanged; i.e. the ‘flapping’ motion is strictly a second coordination sphere effect. These results suggest that the local environment of molecular flexibility plays a key role in determining reactivity at the metal center, which has essential implications for understanding the reactivity of organometallic catalysts and metalloenzyme active sites. We propose that this molecular flexibility component of reactivity can be considered a thematic ‘third coordination sphere’ that dictates metal structure and function. 

Abstract Phosphopantetheinyl transferases (PPTases) play an essential role in primary and secondary metabolism. These enzymes facilitate the post-translational activation of acyl carrier proteins (ACPs) central to the biosynthesis of fatty acids and polyketides. Modulation of ACP-PPTase interactions is a promising approach to both increase access to desired molecular outputs and disrupt mechanisms associated with disease progression. However, such an approach requires understanding the molecular principles that govern ACP-PPTase interactions across diverse synthases. Through a multi-year, course-based undergraduate research experience (CURE), 17 ACPs representing a range of putative type II polyketide synthases, from actinobacterial and non-actinobacterial phyla, were evaluated as substrates for three PPTases (AcpS, Sfp, and vulPPT). The observed PPTase compatibility, sequence-level analyses, and predictive structural modelling suggest that ACP selectivity is driven by amino acids surrounding the conserved, modified serine on the ACP. We propose that vulPPT and Sfp are driven primarily by hydrophobic contacts, whereas AcpS may favor ACPs which exhibit high net-negative charge density, as well as a broad electronegative surface distribution. Furthermore, we report a plausible, hitherto unreported hydrophobic interaction between vulPPT and a conserved ACP crease, upstream of the invariant serine, which may facilitate docking. This work provides a catalog of compatible and incompatible ACP-PPTase partnerships, highlighting specific regions on the ACP and/or PPTase that show promise for future strategic engineering and inhibitor development efforts.