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Creators/Authors contains: "Elineau, Amanda"

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  1. Abstract. This paper presents the quantitative imaging datasets collected during the Tara Pacific expedition (2016–2018) carried out on the schooner Tara. The datasets cover a wide range of plankton sizes, from microphytoplankton (> 20 µm in size) to mesozooplankton (a few centimetres in size), and non-living particles such as plastic and detrital particles. It consists of surface samples collected across the North Atlantic and the North and South Pacific Ocean from open-ocean stations (a total of 357 samples) and from stations located in coastal waters, lagoons or reefs of 32 Pacific islands (a total of 228 samples). As this expedition involved long distances and long sailing times, we designed two sampling systems to collect plankton while sailing at speeds of up to 9 knots. To sample microplankton, surface water was pumped aboard using a customised pumping system and filtered through a 20 µm mesh size plankton net (hereafter referred to as the deck net – DN). A high-speed net (HSN; 330 µm mesh size) was developed to sample the mesoplankton. In addition, a manta net (330 µm) was also used, when possible, to collect mesoplankton and plastics simultaneously. We could not deploy these nets at the reef and lagoon stations of islands. Instead, two bongo nets (20 µm) attached to an underwater scooter were used to sample microplankton. In addition to describing and presenting the datasets, the complementary aim of this paper is to investigate and quantify the potential sampling biases associated with these two high-speed sampling systems and the different net types, in order to improve further ecological interpretations. Regarding the imaging techniques, microplankton (20–200 µm) from the DN and bongo net were imaged directly aboard Tara using a FlowCam instrument (Fluid Imaging Technologies), whereas mesoplankton (>200 µm) from the HSN and manta net were analysed in the laboratory with a ZooScan system (back on land). Organisms and other particles were taxonomically and morphologically classified using the automatic sorting tools of the EcoTaxa web application; following this, validation or correction was carried out by taxonomic experts. For microplankton smaller than 45 µm, a subsample of 30 % of the annotations was 100 % visually validated by experts. More than 300 different taxonomic and morphological groups were identified. The datasets include the metadata and the raw data from which morphological traits such as size (equivalent spherical diameter) and biovolume were calculated for each particle as well as a number of quantitative descriptors of the surface plankton communities. These descriptors include abundance, biovolumes, the Shannon diversity index and normalised biovolume size spectrum, allowing the study of their structures (e.g. taxonomic, functional, size and trophic structures) according to a wide range of environmental parameters at the basin scale (https://doi.org/10.5281/zenodo.6445609, Lombard et al., 2023). 
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  2. Abstract. In marine ecosystems, most physiological, ecological, or physical processes are size dependent. These include metabolic rates, the uptake of carbon and other nutrients, swimming and sinking velocities, and trophic interactions, which eventually determine the stocks of commercial species, as well as biogeochemical cycles and carbon sequestration. As such, broad-scale observations of plankton size distribution are important indicators of the general functioning and state of pelagic ecosystems under anthropogenic pressures. Here, we present the first global datasets of the Pelagic Size Structure database (PSSdb), generated from plankton imaging devices. This release includes the bulk particle normalized biovolume size spectrum (NBSS) and the bulk particle size distribution (PSD), along with their related parameters (slope, intercept, and R2) measured within the epipelagic layer (0–200 m) by three imaging sensors: the Imaging FlowCytobot (IFCB), the Underwater Vision Profiler (UVP), and benchtop scanners. Collectively, these instruments effectively image organisms and detrital material in the 7–10 000 µm size range. A total of 92 472 IFCB samples, 3068 UVP profiles, and 2411 scans passed our quality control and were standardized to produce consistent instrument-specific size spectra averaged to 1° × 1° latitude and longitude and by year and month. Our instrument-specific datasets span most major ocean basins, except for the IFCB datasets we have ingested, which were exclusively collected in northern latitudes, and cover decadal time periods (2013–2022 for IFCB, 2008–2021 for UVP, and 1996–2022 for scanners), allowing for a further assessment of the pelagic size spectrum in space and time. The datasets that constitute PSSdb's first release are available at https://doi.org/10.5281/zenodo.11050013 (Dugenne et al., 2024b). In addition, future updates to these data products can be accessed at https://doi.org/10.5281/zenodo.7998799. 
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  3. Abstract. Marine particles of different nature are found throughout the globalocean. The term “marine particles” describes detritus aggregates andfecal pellets as well as bacterioplankton, phytoplankton, zooplankton andnekton. Here, we present a global particle size distribution datasetobtained with several Underwater Vision Profiler 5 (UVP5) camerasystems. Overall, within the 64 µm to about 50 mm size range coveredby the UVP5, detrital particles are the most abundant component of allmarine particles; thus, measurements of theparticle size distribution with the UVP5 can yield importantinformation on detrital particle dynamics. During deployment, which ispossible down to 6000 m depth, the UVP5 images a volume of about 1 Lat a frequency of 6 to 20 Hz. Each image is segmented in real time, andsize measurements of particles are automatically stored. All UVP5units used to generate the dataset presented here wereinter-calibrated using a UVP5 high-definition unit as reference. Ourconsistent particle size distribution dataset contains 8805 verticalprofiles collected between 19 June 2008 and 23 November 2020. All major ocean basins, as well as the Mediterranean Sea and the Baltic Sea, were sampled. A total of 19 % of all profiles had a maximum sampling depth shallower than 200 dbar, 38 % sampled at least the upper 1000 dbar depth range and 11 % went down to at least 3000 dbar depth. First analysis of the particle size distribution dataset shows that particle abundance is found to be high at high latitudes and in coastal areas where surface productivity or continental inputs are elevated. The lowest values are found in the deep ocean and in the oceanic gyres. Our dataset should be valuable for more in-depth studies that focus on the analysis of regional, temporal and global patterns of particle size distribution and flux as well as for the development and adjustment of regional and global biogeochemical models. The marine particle size distribution dataset (Kiko et al., 2021) is available at https://doi.org/10.1594/PANGAEA.924375. 
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