Search for: All records

Recent work has shown that machine learning (ML) models can be trained to accurately forecast the dynamics of unknown chaotic dynamical systems. Short-term predictions of the state evolution and long-term predictions of the statistical patterns of the dynamics (``climate'') can be produced by employing a feedback loop, whereby the model is trained to predict forward one time step, then the model output is used as input for multiple time steps. In the absence of mitigating techniques, however, this technique can result in artificially rapid error growth. In this article, we systematically examine the technique of adding noise to the ML model input during training to promote stability and improve prediction accuracy. Furthermore, we introduce Linearized Multi-Noise Training (LMNT), a regularization technique that deterministically approximates the effect of many small, independent noise realizations added to the model input during training. Our case study uses reservoir computing, a machine-learning method using recurrent neural networks, to predict the spatiotemporal chaotic Kuramoto-Sivashinsky equation. We find that reservoir computers trained with noise or with LMNT produce climate predictions that appear to be indefinitely stable and have a climate very similar to the true system, while reservoir computers trained without regularization are unstable. Compared with other regularization techniques that yield stability in some cases, we find that both short-term and climate predictions from reservoir computers trained with noise or with LMNT are substantially more accurate. Finally, we show that the deterministic aspect of our LMNT regularization facilitates fast hyperparameter tuning when compared to training with noise. 

We study a simplified model of gene regulatory network evolution in which links (regulatory interactions) are added via various selection rules that are based on the structural and dynamical features of the network nodes (genes). Similar to well-studied models of ‘explosive’ percolation, in our approach, links are selectively added so as to delay the transition to large-scale damage propagation, i.e. to make the network robust to small perturbations of gene states. We find that when selection depends only on structure, evolved networks are resistant to widespread damage propagation, even without knowledge of individual gene propensities for becoming ‘damaged’. We also observe that networks evolved to avoid damage propagation tend towards disassortativity (i.e. directed links preferentially connect high degree ‘source’ genes to low degree ‘target’ genes and vice versa). We compare our simulations to reconstructed gene regulatory networks for several different species, with genes and links added over evolutionary time, and we find a similar bias towards disassortativity in the reconstructed networks. 

In many real-world applications, fully-differentiable RNNs such as LSTMs and GRUs have been widely deployed to solve time series learning tasks. These networks train via Backpropagation Through Time, which can work well in practice but involves a biologically unrealistic unrolling of the network in time for gradient updates, are computationally expensive, and can be hard to tune. A second paradigm, Reservoir Computing, keeps the recurrent weight matrix fixed and random. Here, we propose a novel hybrid network, which we call Hybrid Backpropagation Parallel Echo State Network (HBP-ESN) which combines the effectiveness of learning random temporal features of reservoirs with the readout power of a deep neural network with batch normalization. We demonstrate that our new network outperforms LSTMs and GRUs, including multi-layer "deep" versions of these networks, on two complex real-world multi-dimensional time series datasets: gesture recognition using skeleton keypoints from ChaLearn, and the DEAP dataset for emotion recognition from EEG measurements. We show also that the inclusion of a novel meta-ring structure, which we call HBP-ESN M-Ring, achieves similar performance to one large reservoir while decreasing the memory required by an order of magnitude. We thus offer this new hybrid reservoir deep learning paradigm as a new alternative direction for RNN learning of temporal or sequential data. 

We investigate the ways in which a machine learning architecture known as Reservoir Computing learns concepts such as “similar” and “different” and other relationships between image pairs and generalizes these concepts to previously unseen classes of data. We present two Reservoir Computing architectures, which loosely resemble neural dynamics, and show that a Reservoir Computer (RC) trained to identify relationships between image pairs drawn from a subset of training classes generalizes the learned relationships to substantially different classes unseen during training. We demonstrate our results on the simple MNIST handwritten digit database as well as a database of depth maps of visual scenes in videos taken from a moving camera. We consider image pair relationships such as images from the same class; images from the same class with one image superposed with noise, rotated 90°, blurred, or scaled; images from different classes. We observe that the reservoir acts as a nonlinear filter projecting the input into a higher dimensional space in which the relationships are separable; i.e., the reservoir system state trajectories display different dynamical patterns that reflect the corresponding input pair relationships. Thus, as opposed to training in the entire high-dimensional reservoir space, the RC only needs to learns characteristic features of these dynamical patterns, allowing it to perform well with very few training examples compared with conventional machine learning feed-forward techniques such as deep learning. In generalization tasks, we observe that RCs perform significantly better than state-of-the-art, feed-forward, pair-based architectures such as convolutional and deep Siamese Neural Networks (SNNs). We also show that RCs can not only generalize relationships, but also generalize combinations of relationships, providing robust and effective image pair classification. Our work helps bridge the gap between explainable machine learning with small datasets and biologically inspired analogy-based learning, pointing to new directions in the investigation of learning processes.