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Creators/Authors contains: "Ibey, Bennett L"

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  1. Abstract Measurements and imaging of the mechanical response of biological cells are critical for understanding the mechanisms of many diseases, and for fundamental studies of energy, signal and force transduction. The recent emergence of Brillouin microscopy as a powerful non-contact, label-free way to non-invasively and non-destructively assess local viscoelastic properties provides an opportunity to expand the scope of biomechanical research to the sub-cellular level. Brillouin spectroscopy has recently been validated through static measurements of cell viscoelastic properties, however, fast (sub-second) measurements of sub-cellular cytomechanical changes have yet to be reported. In this report, we utilize a custom multimodal spectroscopy system to monitor for the very first time the rapid viscoelastic response of cells and subcellular structures to a short-duration electrical impulse. The cytomechanical response of three subcellular structures - cytoplasm, nucleoplasm, and nucleoli - were monitored, showing distinct mechanical changes despite an identical stimulus. Through this pioneering transformative study, we demonstrate the capability of Brillouin spectroscopy to measure rapid, real-time biomechanical changes within distinct subcellular compartments. Our results support the promising future of Brillouin spectroscopy within the broad scope of cellular biomechanics. 
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    Free, publicly-accessible full text available December 1, 2025
  2. Monte Carlo Simulations (MCSs) allow for the estimation of photon propagation through media given knowledge of the geometry and optical properties. Previous research has demonstrated that the inverse of this problem may be solved as well, where neural networks trained on photon distributions can be used to estimate refractive index, scattering and absorption coefficients. To extend this work, time-dependent MCSs are used to generate data sets of photon propagation through various media. These simulations were treated as stacks of 2D images in time and used to train convolutional networks to estimate tissue parameters. To find potential features that drive network performance on this task, networks were randomly generated. Generated networks were then trained. The networks were validated using 4-fold cross validation. The consistently performing top 10 networks typically had an emphasis on convolutional chains and convolutional chains ending in max pooling. 
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