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  1. Stedman, Kenneth M (Ed.)
    ABSTRACT <p>Here, we report on the raw and coassembled metatranscriptomes of 39 Lake Erie surface (1.0 m) water samples collected over a 2-day diel period encompassing episodic weather and bloom events. Preliminary taxonomic annotations and read mappings revealed that<italic>Microcystis</italic>spp. accounted for up to ~47% of the transcriptionally active community.</p></sec> </div> <a href='#' class='show open-abstract' style='margin-left:10px;'>more »</a> <a href='#' class='hide close-abstract' style='margin-left:10px;'>« less</a> <div class="actions" style="padding-left:10px;"> <span class="reader-count"> Free, publicly-accessible full text available November 12, 2025</span> </div> </div><div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemscope itemtype="http://schema.org/TechArticle"> <div class="item-info"> <div class="title"> <a href="https://par.nsf.gov/biblio/10543608-genetic-mapping-prode-new-lethal-allele-prod" itemprop="url"> <span class='span-link' itemprop="name">Genetic Mapping of prodE.3.3, a New Lethal Allele of prod</span> </a> </div> <div> <strong> <a class="misc external-link" href="https://doi.org/10.17912/micropub.biology.001236" target="_blank" title="Link to document DOI">https://doi.org/10.17912/micropub.biology.001236  <span class="fas fa-external-link-alt"></span></a> </strong> </div> <div class="metadata"> <span class="authors"> <span class="author" itemprop="author">Johnson, Emma</span> <span class="sep">; </span><span class="author" itemprop="author">Kinney, Talbot</span> <span class="sep">; </span><span class="author" itemprop="author">Luellen, Hannah</span> <span class="sep">; </span><span class="author" itemprop="author">Amerud, Rhiannan</span> <span class="sep">; </span><span class="author" itemprop="author">Anderson, Daysha R</span> <span class="sep">; </span><span class="author" itemprop="author">Anderson, Marie</span> <span class="sep">; </span><span class="author" itemprop="author">Andres, Arnelyn Mae</span> <span class="sep">; </span><span class="author" itemprop="author">Arshad, Rameel</span> <span class="sep">; </span><span class="author" itemprop="author">Babin-Howard, Kylie</span> <span class="sep">; </span><span class="author" itemprop="author">Barrigah, Dede G</span> <span class="sep">; </span><span class="author">et al</span></span> <span class="year">( <time itemprop="datePublished" datetime="2024-07-29">July 2024</time> , microPublication biology) </span> </div> <div style="cursor: pointer;-webkit-line-clamp: 5;" class="abstract" itemprop="description"> <p>The <i>E.3.3</i> mutation was generated in a Flp/FRT EMS screen for conditional mutations that cause growth and developmental defects in a genetic background that blocks apoptosis. The mutations were conditional, based on the <i>Dark<sup>82</sup></i>allele being present on the starting chromosome, and blocking canonical apoptosis in a homozygous state. The <i>E.3.3</i> mosaic eyes exhibit defects in eye development including patches of rough eye and irregular surface structure. Whole Genome Sequencing and complementation mapping revealed <i>E.3.3</i> as an allele of <i>prod</i>. Prod is a DNA-binding protein that binds satellite repeats and is involved in chromocenter formation during mitosis. Here we present a novel allele of <i>prod</i>, <i>prod<sup>E.3.3</sup></i>, that disrupts the functional region of the Prod protein resulting in disruption of typical eye structure, likely due to disruption of chromatid separation during development.</p> </div> <a href='#' class='show open-abstract' style='margin-left:10px;'>more »</a> <a href='#' class='hide close-abstract' style='margin-left:10px;'>« less</a> <div class="actions" style="padding-left:10px;"> <span class="reader-count"> Free, publicly-accessible full text available July 29, 2025</span> </div> </div><div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemscope itemtype="http://schema.org/TechArticle"> <div class="item-info"> <div class="title"> <a href="https://par.nsf.gov/biblio/10300728-exact-scalable-problem-decomposition-security-constrained-optimal-power-flow" itemprop="url"> <span class='span-link' itemprop="name">An exact and scalable problem decomposition for security-constrained optimal power flow</span> </a> </div> <div> <strong> <a class="misc external-link" href="https://doi.org/10.1016/j.epsr.2020.106677" target="_blank" title="Link to document DOI">https://doi.org/10.1016/j.epsr.2020.106677  <span class="fas fa-external-link-alt"></span></a> </strong> </div> <div class="metadata"> <span class="authors"> <span class="author" itemprop="author">Velloso, Alexandre</span> <span class="sep">; </span><span class="author" itemprop="author">Van Hentenryck, Pascal</span> <span class="sep">; </span><span class="author" itemprop="author">Johnson, Emma S.</span> </span> <span class="year">( <time itemprop="datePublished" datetime="2021-06-01">June 2021</time> , Electric Power Systems Research) </span> </div> <span class="editors"> <span class="editor" itemprop="editor">null</span> (Ed.) </span> <div class="actions" style="padding-left:10px;"> <span class="reader-count"> <a class="misc external-link" href="https://doi.org/10.1016/j.epsr.2020.106677" target="_blank" title="Link to document DOI" data-ostiid="10300728"> Full Text Available <span class="fas fa-external-link-alt"></span> </a> </span> </div> </div><div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemscope itemtype="http://schema.org/TechArticle"> <div class="item-info"> <div class="title"> <a href="https://par.nsf.gov/biblio/10303173-estimating-non-hazardous-industrial-waste-generation-sector-location-year-united-states-methodological-framework-case-example-spent-foundry-sand" itemprop="url"> <span class='span-link' itemprop="name">Estimating non-hazardous industrial waste generation by sector, location, and year in the United States: A methodological framework and case example of spent foundry sand</span> </a> </div> <div> <strong> <a class="misc external-link" href="https://doi.org/10.1016/j.wasman.2020.08.056" target="_blank" title="Link to document DOI">https://doi.org/10.1016/j.wasman.2020.08.056  <span class="fas fa-external-link-alt"></span></a> </strong> </div> <div class="metadata"> <span class="authors"> <span class="author" itemprop="author">Li, Xiao</span> <span class="sep">; </span><span class="author" itemprop="author">Chertow, Marian</span> <span class="sep">; </span><span class="author" itemprop="author">Guo, Shengjie</span> <span class="sep">; </span><span class="author" itemprop="author">Johnson, Emma</span> <span class="sep">; </span><span class="author" itemprop="author">Jiang, Daqian</span> </span> <span class="year">( <time itemprop="datePublished" datetime="2020-12-01">December 2020</time> , Waste Management) </span> </div> <div class="actions" style="padding-left:10px;"> <span class="reader-count"> <a class="misc external-link" href="https://doi.org/10.1016/j.wasman.2020.08.056" target="_blank" title="Link to document DOI" data-ostiid="10303173"> Full Text Available <span class="fas fa-external-link-alt"></span> </a> </span> </div> </div><div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemscope itemtype="http://schema.org/TechArticle"> <div class="item-info"> <div class="title"> <a href="https://par.nsf.gov/biblio/10087032-success-concrete-crab-traps-facilitating-eastern-oyster-recruitment-reef-development" itemprop="url"> <span class='span-link' itemprop="name">Success of concrete and crab traps in facilitating Eastern oyster recruitment and reef development</span> </a> </div> <div> <strong> <a class="misc external-link" href="https://doi.org/10.7717/peerj.6488" target="_blank" title="Link to document DOI">https://doi.org/10.7717/peerj.6488  <span class="fas fa-external-link-alt"></span></a> </strong> </div> <div class="metadata"> <span class="authors"> <span class="author" itemprop="author">Johnson, Emma E.</span> <span class="sep">; </span><span class="author" itemprop="author">Medina, Miles D.</span> <span class="sep">; </span><span class="author" itemprop="author">Bersoza Hernandez, Ada C.</span> <span class="sep">; </span><span class="author" itemprop="author">Kusel, Gregory A.</span> <span class="sep">; </span><span class="author" itemprop="author">Batzer, Audrey N.</span> <span class="sep">; </span><span class="author" itemprop="author">Angelini, Christine</span> </span> <span class="year">( <time itemprop="datePublished" datetime="2019-01-01">January 2019</time> , PeerJ) </span> </div> <div style="cursor: pointer;-webkit-line-clamp: 5;" class="abstract" itemprop="description"> Background Abundance of the commercially and ecologically important Eastern oyster, Crassostrea virginica , has declined across the US Eastern and Gulf coasts in recent decades, spurring substantial efforts to restore oyster reefs. These efforts are widely constrained by the availability, cost, and suitability of substrates to support oyster settlement and reef establishment. In particular, oyster shell is often the preferred substrate but is relatively scarce and increasingly expensive. Thus, there is a need for alternative oyster restoration materials that are cost-effective, abundant, and durable. Methods We tested the viability of two low-cost substrates—concrete and recycled blue crab ( Callinectes sapidus ) traps—in facilitating oyster recovery in a replicated 22-month field experiment at historically productive but now degraded intertidal oyster grounds on northwestern Florida’s Nature Coast. Throughout the trial, we monitored areal oyster cover on each substrate; at the end of the trial, we measured the densities of oysters by size class (spat, juvenile, and market-size) and the biomass and volume of each reef. Results Oysters colonized the concrete structures more quickly than the crab traps, as evidenced by significantly higher oyster cover during the first year of the experiment. By the end of the experiment, the concrete structures hosted higher densities of spat and juveniles, while the density of market-size oysters was relatively low and similar between treatments. The open structure of the crab traps led to the development of larger-volume reefs, while oyster biomass per unit area was similar between treatments. In addition, substrates positioned at lower elevations (relative to mean sea level) supported higher oyster abundance, size, and biomass than those less frequently inundated at higher elevations. Discussion Together, these findings indicate that both concrete and crab traps are viable substrates for oyster reef restoration, especially when placed at lower intertidal elevations conducive to oyster settlement and reef development. </div> <a href='#' class='show open-abstract' style='margin-left:10px;'>more »</a> <a href='#' class='hide close-abstract' style='margin-left:10px;'>« less</a> <div class="actions" style="padding-left:10px;"> <span class="reader-count"> <a class="misc external-link" href="https://doi.org/10.7717/peerj.6488" target="_blank" title="Link to document DOI" data-ostiid="10087032"> Full Text Available <span class="fas fa-external-link-alt"></span> </a> </span> </div> </div><div class="clearfix"></div> </div> </li> <li> <div class="article item document" itemscope itemtype="http://schema.org/TechArticle"> <div class="item-info"> <div class="title"> <a href="https://par.nsf.gov/biblio/10072973-foundation-species-patch-configuration-mediates-salt-marsh-biodiversity-stability-multifunctionality" itemprop="url"> <span class='span-link' itemprop="name">Foundation species patch configuration mediates salt marsh biodiversity, stability and multifunctionality</span> </a> </div> <div> <strong> <a class="misc external-link" href="https://doi.org/10.1111/ele.13146" target="_blank" title="Link to document DOI">https://doi.org/10.1111/ele.13146  <span class="fas fa-external-link-alt"></span></a> </strong> </div> <div class="metadata"> <span class="authors"> <span class="author" itemprop="author">Crotty, Sinéad M.</span> <span class="sep">; </span><span class="author" itemprop="author">Sharp, Sean J.</span> <span class="sep">; </span><span class="author" itemprop="author">Bersoza, Ada C.</span> <span class="sep">; </span><span class="author" itemprop="author">Prince, Kimberly D.</span> <span class="sep">; </span><span class="author" itemprop="author">Cronk, Katheryne</span> <span class="sep">; </span><span class="author" itemprop="author">Johnson, Emma E.</span> <span class="sep">; </span><span class="author" itemprop="author">Angelini, Christine</span> <span class="sep">; </span><span class="author" itemprop="author">O'Connor, ed., Mary</span> </span> <span class="year">( <time itemprop="datePublished" datetime="2018-11-01">November 2018</time> , Ecology Letters) </span> </div> <div class="actions" style="padding-left:10px;"> </div> </div><div class="clearfix"></div> </div> </li> </ol> <div id="pagination-lower" style="display:none;"> <div class="pull-right" style="line-height: 30px;"> <div class="btn-group pagination nomargin"> <a href="#" class="btn btn-sm btn-default noborderradius" disabled="disabled">«<span class="hidden-xs"> Prev</span></a> <a class="dropdown-toggle btn btn-sm btn-default paging-dropdown disabled hidden-xs noborderradius" href="#" data-toggle="dropdown"> <span class="caret"></span> <span class="sr-only" style="color: rgb(0, 0, 0); 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