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Mountains and islands provide an opportunity for studying the biogeography of diversification and population fragmentation. Aotearoa (New Zealand) is an excellent location to investigate both phenomena due to alpine emergence and oceanic separation. While it would be expected that separation across oceanic and elevation gradients are major barriers to gene flow in animals, including aquatic insects, such hypotheses have not been thoroughly tested in these taxa. By integrating population genomic from sub-genomic Anchored-Hybrid Enrichment sequencing, ecological niche modeling, and morphological analyses from scanning-electron microscopy, we show that tectonic uplift and oceanic vicariance are implicated in speciation and population structure in Kapokapowai (Uropetala) dragonflies. Although Te Moana o Raukawa (Cook Strait), is likely responsible for some of the genetic structure observed, speciation has not yet occurred in populations separated by the strait. We find that the altitudinal gradient across Kā Tiritiri-o-te-Moana (the Southern Alps) is not impervious but it significantly restricts gene flow between aforementioned species. Our data support the hypothesis of an active colonization of Kā Tiritiri-o-te-Moana by the ancestral population of Kapokapowai, followed by a recolonization of the lowlands. These findings provide key foundations for the study of lineages endemic to Aotearoa. 

Abstract Using recently published chromosome‐length genome assemblies of two damselfly species,Ischnura elegansandPlatycnemis pennipes, and two dragonfly species,Pantala flavescensandTanypteryx hageni, we demonstrate that the autosomes of Odonata have undergone few fission, fusion, or inversion events, despite 250 million years of separation. In the four genomes discussed here, our results show that all autosomes have a clear ortholog in the ancestral karyotype. Despite this clear chromosomal orthology, we demonstrate that different factors, including concentration of repeat dynamics, GC content, relative position on the chromosome, and the relative proportion of coding sequence all influence the density of syntenic blocks across chromosomes. However, these factors do not interact to influence synteny the same way in any two pairs of species, nor is any one factor retained in all four species. Furthermore, it was previously unknown whether the micro‐chromosomes in Odonata are descended from one ancestral chromosome. Despite structural rearrangements, our evidence suggests that the micro‐chromosomes in the sampled Odonata do indeed descend from an ancestral chromosome, and that the micro‐chromosome inP. flavescenswas lost through fusion with autosomes. 

The advent of third generation sequencing technologies has led to a boom of high-quality, chromosome level genome assemblies of Odonata, but to date, these have not been widely used to estimate the demographic history of the sequenced species through time. Yet, an understanding of how lineages have responded to past changes in the climate is useful in predicting their response to current and future changes in the climate. Here, we utilized the pairwise sequential markovian coalescent (PSMC) to estimate the demographic histories of Sympetrum striolatum, Ischnura elegans, and Hetaerina americana, three Odonata for which chromosome-length genome assemblies are available. Ischnura elegans showed a sharp decline in effective population size around the onset of the Pleistocene ice ages, while both S. striolatum and H. americana showed more recent declines. All three species have had relatively stable population sizes over the last one hundred thousand years. Although it is important to remain cautious when determining the conservation status of species, the coalescent models did not show any reason for major concern in any of the three species tested. The model for I. elegans confirmed prior research suggesting that population sizes of I. elegans will increase as temperatures rise.