Search for: All records

Abstract Large spatio‐temporal gradients in the Congo basin vegetation and rainfall are observed. However, its water‐balance (evapotranspiration minus precipitation, orET − P) is typically measured at basin‐scales, limited primarily by river‐discharge data, spatial resolution of terrestrial water storage measurements, and poorly constrainedET. We use observations of the isotopic composition of water vapor to quantify the spatio‐temporal variability of net surface water fluxes across the Congo Basin between 2003 and 2018. These data are calibrated at basin scale using satellite gravity and total Congo river discharge measurements and then used to estimate time‐varyingET − Pover four quadrants representing the Congo Basin, providing first estimates of this kind for the region. We find that the multi‐year record, seasonality, and interannual variability ofET − Pfrom both the isotopes and the gravity/river discharge based estimates are consistent. Additionally, we use precipitation and gravity‐based estimates with our water vapor isotope‐basedET − Pto calculate time and space averagedETand net river discharge within the Congo Basin. These quadrant‐scale moisture flux estimates indicate (a) substantial recycling of moisture in the Congo Basin (temporally and spatially averagedET/P > 70%), consistent with models and visible light‐basedETestimates, and (b) net river outflow is largest in the Western Congo where there are more rivers and higher flow rates. Our results confirm the importance ofETin modulating the Congo water cycle relative to other water sources. 

Abstract Water stress regulates land‐atmosphere carbon dioxide (CO₂) exchanges in the tropics; however, its role remains poorly characterized due to the confounding roles of radiation, temperature and canopy dynamics. In particular, uncertainty stems from the relative roles of plant‐available water (supply) and atmospheric water vapor deficit (demand) as mechanistic drivers of photosynthetic carbon (C) uptake variability. Using satellite measurements of gravity, CO₂and fluorescence to constrain a mechanistic carbon‐water cycle model from 2001 to 2018, we found that the interannual variability (IAV) of water stress on photosynthetic C uptake was 52% greater than the combined effects of other factors. Surprisingly, the dominance of water stress on C uptake IAV was greater in the wet tropics (94%) than in the dry tropics (26%). Plant‐available water supply and atmospheric demand both contributed to the IAV of water stress on photosynthetic C uptake across the tropics, but the IAV of demand effects was 21% greater than the IAV of supply effects (33% greater in the wet tropics and 6% greater in the dry tropics). We found that the IAV of water stress on C uptake was 24% greater than the IAV of the combination of other factors in the net land‐atmosphere C sink in the whole tropics, 26% greater in the wet tropics, and 7% greater in the dry tropics. Given the recent trends in tropical precipitation and atmospheric humidity, our findings indicate that water stress——from both supply and demand——will likely dominate the climate response of land C sink across tropical ecosystems in the coming decades. 

Abstract Many peptide hormones form an α-helix on binding their receptors^1–4, and sensitive methods for their detection could contribute to better clinical management of disease⁵. De novo protein design can now generate binders with high affinity and specificity to structured proteins^6,7. However, the design of interactions between proteins and short peptides with helical propensity is an unmet challenge. Here we describe parametric generation and deep learning-based methods for designing proteins to address this challenge. We show that by extending RFdiffusion⁸to enable binder design to flexible targets, and to refining input structure models by successive noising and denoising (partial diffusion), picomolar-affinity binders can be generated to helical peptide targets by either refining designs generated with other methods, or completely de novo starting from random noise distributions without any subsequent experimental optimization. The RFdiffusion designs enable the enrichment and subsequent detection of parathyroid hormone and glucagon by mass spectrometry, and the construction of bioluminescence-based protein biosensors. The ability to design binders to conformationally variable targets, and to optimize by partial diffusion both natural and designed proteins, should be broadly useful. 

In nature, proteins that switch between two conformations in response to environmental stimuli structurally transduce biochemical information in a manner analogous to how transistors control information flow in computing devices. Designing proteins with two distinct but fully structured conformations is a challenge for protein design as it requires sculpting an energy landscape with two distinct minima. Here we describe the design of “hinge” proteins that populate one designed state in the absence of ligand and a second designed state in the presence of ligand. X-ray crystallography, electron microscopy, double electron-electron resonance spectroscopy, and binding measurements demonstrate that despite the significant structural differences the two states are designed with atomic level accuracy and that the conformational and binding equilibria are closely coupled. 

Abstract. The terrestrial carbon cycle plays a critical role in modulating the interactions of climate with the Earth system, but different models often make vastly different predictions of its behavior. Efforts to reduce model uncertainty have commonly focused on model structure, namely by introducing additional processes and increasing structural complexity. However, the extent to which increased structural complexity can directly improve predictive skill is unclear. While adding processes may improve realism, the resulting models are often encumbered by a greater number of poorly determined or over-generalized parameters. To guide efficient model development, here we map the theoretical relationship between model complexity and predictive skill. To do so, we developed 16 structurally distinct carbon cycle models spanning an axis of complexity and incorporated them into a model–data fusion system. We calibrated each model at six globally distributed eddy covariance sites with long observation time series and under 42 data scenarios that resulted in different degrees of parameter uncertainty. For each combination of site, data scenario, and model, we then predicted net ecosystem exchange (NEE) and leaf area index (LAI) for validation against independent local site data. Though the maximum model complexity we evaluated is lower than most traditional terrestrial biosphere models, the complexity range we explored provides universal insight into the inter-relationship between structural uncertainty, parametric uncertainty, and model forecast skill. Specifically, increased complexity only improves forecast skill if parameters are adequately informed (e.g., when NEE observations are used for calibration). Otherwise, increased complexity can degrade skill and an intermediate-complexity model is optimal. This finding remains consistent regardless of whether NEE or LAI is predicted. Our COMPLexity EXperiment (COMPLEX) highlights the importance of robust observation-based parameterization for land surface modeling and suggests that data characterizing net carbon fluxes will be key to improving decadal predictions of high-dimensional terrestrial biosphere models. 

Abstract Boreal‐Arctic regions are key stores of organic carbon (C) and play a major role in the greenhouse gas balance of high‐latitude ecosystems. The carbon‐climate (C‐climate) feedback potential of northern high‐latitude ecosystems remains poorly understood due to uncertainty in temperature and precipitation controls on carbon dioxide (CO₂) uptake and the decomposition of soil C into CO₂and methane (CH₄) fluxes. While CH₄fluxes account for a smaller component of the C balance, the climatic impact of CH₄outweighs CO₂(28–34 times larger global warming potential on a 100‐year scale), highlighting the need to jointly resolve the climatic sensitivities of both CO₂and CH₄. Here, we jointly constrain a terrestrial biosphere model with in situ CO₂and CH₄flux observations at seven eddy covariance sites using a data‐model integration approach to resolve the integrated environmental controls on land‐atmosphere CO₂and CH₄exchanges in Alaska. Based on the combined CO₂and CH₄flux responses to climate variables, we find that 1970‐present climate trends will induce positive C‐climate feedback at all tundra sites, and negative C‐climate feedback at the boreal and shrub fen sites. The positive C‐climate feedback at the tundra sites is predominantly driven by increased CH₄emissions while the negative C‐climate feedback at the boreal site is predominantly driven by increased CO₂uptake (80% from decreased heterotrophic respiration, and 20% from increased photosynthesis). Our study demonstrates the need for joint observational constraints on CO₂and CH₄biogeochemical processes—and their associated climatic sensitivities—for resolving the sign and magnitude of high‐latitude ecosystem C‐climate feedback in the coming decades.