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  1. Mulzer, Wolfgang ; Phillips, Jeff M (Ed.)
    Given a map f:X → M from a topological space X to a metric space M, a decorated Reeb space consists of the Reeb space, together with an attribution function whose values recover geometric information lost during the construction of the Reeb space. For example, when M = ℝ is the real line, the Reeb space is the well-known Reeb graph, and the attributions may consist of persistence diagrams summarizing the level set topology of f. In this paper, we introduce decorated Reeb spaces in various flavors and prove that our constructions are Gromov-Hausdorff stable. We also provide results on approximating decorated Reeb spaces from finite samples and leverage these to develop a computational framework for applying these constructions to point cloud data. 
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  2. Leaf shape is a key plant trait that varies enormously. The range of applications for data on this trait requires frequent methodological development so that researchers have an up-to-date toolkit with which to quantify leaf shape. We generated a dataset of 468 leaves produced by Ginkgo biloba , and 24 fossil leaves produced by evolutionary relatives of extant Ginkgo . We quantified the shape of each leaf by developing a geometric method based on elastic curves and a topological method based on persistent homology. Our geometric method indicates that shape variation in modern leaves is dominated by leaf size, furrow depth and the angle of the two lobes at the leaf base that is also related to leaf width. Our topological method indicates that shape variation in modern leaves is dominated by leaf size and furrow depth. We have applied both methods to modern and fossil material: the methods are complementary, identifying similar primary patterns of variation, but also revealing different aspects of morphological variation. Our topological approach distinguishes long-shoot leaves from short-shoot leaves, both methods indicate that leaf shape influences or is at least related to leaf area, and both could be applied in palaeoclimatic and evolutionary studies of leaf shape. 
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