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Abstract Biospheric particulate organic carbon (POC_bio) burial and rock petrogenic particulate organic carbon (POC_petro) oxidation are opposing long‐term controls on the global carbon cycle, sequestering and releasing carbon, respectively. Here, we examine how watershed glacierization impacts the POC source by assessing the concentration and isotopic composition (δ¹³C and Δ¹⁴C) of POC exported from four watersheds with 0%–49% glacier coverage across a melt season in Southeast Alaska. We used two mixing models (age‐weight percent and dual carbon isotope) to calculate concentrations of POC_bioand POC_petrowithin the bulk POC pool. The fraction POC_petrocontribution was highest in the heavily glacierized watershed (age‐weight percent: 0.39 ± 0.05; dual isotope: 0.42 (0.37–0.47)), demonstrating a glacial source of POC_petroto fjords. POC_petrowas mobilized via glacier melt and subglacial flow, while POC_biowas largely flushed from the non‐glacierized landscape by rain. Flow normalized POC_bioconcentrations exceeded POC_petroconcentrations for all streams, but surprisingly were highest in the heavily glacierized watershed (mean: 0.70 mgL⁻¹; range 0.16–1.41 mgL⁻¹), suggesting that glacier rivers can contribute substantial POC_bioto coastal waters. Further, the most heavily glacierized watershed had the highest sediment concentration (207 mgL⁻¹; 7–708 mgL⁻¹), and thus may facilitate long‐term POC_bioprotection via sediment burial in glacier‐dominated fjords. Our results suggest that continuing glacial retreat will decrease POC concentrations and increase POC_bio:POC_petroexported from currently glacierized watersheds. Glacier retreat may thus decrease carbon storage in marine sediments and provide a positive feedback mechanism to climate change that is sensitive to future changes in POC_petrooxidation.