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Many studies suggest that water quality parameters can be estimated by applying statistical and machine learning methods using remote sensing or in-situ data. However, identifying best practices for implementing solutions appears to be done on a case-by-case basis. In our case, we have in-situ data that covers a large period, but only small areas of Biscayne Bay, Florida. In this paper, we combine available in-situ data with remote sensing data captured by Landsat 8 OLI-TIRS Collection 2 Level 2(L8), Sentinel-2 L2A(S2), and Sentinel-3 OLCI L1B(S3). The combined data set is for use in a water quality parameter estimation application. Our contributions are two-fold. First, we present a pipeline for data collection, processing, and co-location that results in a usable data set of combined remote sensing and in-situ data. Second, we propose a classification model using the combined data set to identify areas of interest for future data collection missions based on chlorophyll-a in-situ measurements. To further prove our methodology, we conduct a data collection mission using one of the predicted paths from our model.