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Johnson, Michael David (Ed.)ABSTRACT Analysis of the genes retained in the minimized Mycoplasma JCVI-Syn3A genome established that systems that repair or preempt metabolite damage are essential to life. Several genes known to have such functions were identified and experimentally validated, including 5-formyltetrahydrofolate cycloligase, coenzyme A (CoA) disulfide reductase, and certain hydrolases. Furthermore, we discovered that an enigmatic YqeK hydrolase domain fused to NadD has a novel proofreading function in NAD synthesis and could double as a MutT-like sanitizing enzyme for the nucleotide pool. Finally, we combined metabolomics and cheminformatics approaches to extend the core metabolic map of JCVI-Syn3A to include promiscuous enzymatic reactions and spontaneous side reactions. This extension revealed that several key metabolite damage control systems remain to be identified in JCVI-Syn3A, such as that for methylglyoxal. IMPORTANCE Metabolite damage and repair mechanisms are being increasingly recognized. We present here compelling genetic and biochemical evidence for the universal importance of these mechanisms by demonstrating that stripping a genome down to its barest essentials leaves metabolite damage control systems in place. Furthermore, our metabolomic and cheminformatic results point to the existence of a network of metabolite damage and damage control reactions that extends far beyond the corners of it that have been characterizedmore »Free, publicly-accessible full text available July 11, 2023
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Abstract We combine JWST observations with Atacama Large Millimeter/submillimeter Array CO and Very Large Telescope MUSE H
α data to examine off-spiral arm star formation in the face-on, grand-design spiral galaxy NGC 628. We focus on the northern spiral arm, around a galactocentric radius of 3–4 kpc, and study two spurs. These form an interesting contrast, as one is CO-rich and one CO-poor, and they have a maximum azimuthal offset in MIRI 21μ m and MUSE Hα of around 40° (CO-rich) and 55° (CO-poor) from the spiral arm. The star formation rate is higher in the regions of the spurs near spiral arms, but the star formation efficiency appears relatively constant. Given the spiral pattern speed and rotation curve of this galaxy and assuming material exiting the arms undergoes purely circular motion, these offsets would be reached in 100–150 Myr, significantly longer than the 21μ m and Hα star formation timescales (both < 10 Myr). The invariance of the star formation efficiency in the spurs versus the spiral arms indicates massive star formation is not only triggered in spiral arms, and cannot simply occur in the arms and then drift away from the wave pattern. These early JWST results show that in situ star formation likelymore » -
Abstract The CO-to-H 2 conversion factor ( α CO ) is critical to studying molecular gas and star formation in galaxies. The value of α CO has been found to vary within and between galaxies, but the specific environmental conditions that cause these variations are not fully understood. Previous observations on ~kiloparsec scales revealed low values of α CO in the centers of some barred spiral galaxies, including NGC 3351. We present new Atacama Large Millimeter/submillimeter Array Band 3, 6, and 7 observations of 12 CO, 13 CO, and C 18 O lines on 100 pc scales in the inner ∼2 kpc of NGC 3351. Using multiline radiative transfer modeling and a Bayesian likelihood analysis, we infer the H 2 density, kinetic temperature, CO column density per line width, and CO isotopologue abundances on a pixel-by-pixel basis. Our modeling implies the existence of a dominant gas component with a density of 2–3 × 10 3 cm −3 in the central ∼1 kpc and a high temperature of 30–60 K near the nucleus and near the contact points that connect to the bar-driven inflows. Assuming a CO/H 2 abundance of 3 × 10 −4 , our analysis yields α CO ∼more »
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ABSTRACT The processes of star formation and feedback, regulating the cycle of matter between gas and stars on the scales of giant molecular clouds (GMCs; ∼100 pc), play a major role in governing galaxy evolution. Measuring the time-scales of GMC evolution is important to identify and characterize the specific physical mechanisms that drive this transition. By applying a robust statistical method to high-resolution CO and narrow-band H α imaging from the PHANGS survey, we systematically measure the evolutionary timeline from molecular clouds to exposed young stellar regions on GMC scales, across the discs of an unprecedented sample of 54 star-forming main-sequence galaxies (excluding their unresolved centres). We find that clouds live for about 1−3 GMC turbulence crossing times (5−30 Myr) and are efficiently dispersed by stellar feedback within 1−5 Myr once the star-forming region becomes partially exposed, resulting in integrated star formation efficiencies of 1−8 per cent. These ranges reflect physical galaxy-to-galaxy variation. In order to evaluate whether galactic environment influences GMC evolution, we correlate our measurements with average properties of the GMCs and their local galactic environment. We find several strong correlations that can be physically understood, revealing a quantitative link between galactic-scale environmental properties and the small-scale GMC evolution. Notably, the measured CO-visible cloudmore »
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Abstract We measure the low- J CO line ratios R 21 ≡ CO (2–1)/CO (1–0), R 32 ≡ CO (3–2)/CO (2–1), and R 31 ≡CO (3–2)/CO (1–0) using whole-disk CO maps of nearby galaxies. We draw CO (2–1) from PHANGS-ALMA, HERACLES, and follow-up IRAM surveys; CO (1–0) from COMING and the Nobeyama CO Atlas of Nearby Spiral Galaxies; and CO (3–2) from the James Clerk Maxwell Telescope Nearby Galaxy Legacy Survey and Atacama Pathfinder Experiment Large APEX Sub-Millimetre Array mapping. All together, this yields 76, 47, and 29 maps of R 21 , R 32 , and R 31 at 20″ ∼ 1.3 kpc resolution, covering 43, 34, and 20 galaxies. Disk galaxies with high stellar mass, log ( M ⋆ / M ⊙ ) = 10.25 – 11 , and star formation rate (SFR) = 1–5 M ⊙ yr −1 , dominate the sample. We find galaxy-integrated mean values and a 16%–84% range of R 21 = 0.65 (0.50–0.83), R 32 = 0.50 (0.23–0.59), and R 31 = 0.31 (0.20–0.42). We identify weak trends relating galaxy-integrated line ratios to properties expected to correlate with excitation, including SFR/ M ⋆ and SFR/ L CO . Within galaxies, we measure centralmore »Free, publicly-accessible full text available March 1, 2023
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Abstract We present a rich, multiwavelength, multiscale database built around the PHANGS–ALMA CO (2 − 1) survey and ancillary data. We use this database to present the distributions of molecular cloud populations and subgalactic environments in 80 PHANGS galaxies, to characterize the relationship between population-averaged cloud properties and host galaxy properties, and to assess key timescales relevant to molecular cloud evolution and star formation. We show that PHANGS probes a wide range of kpc-scale gas, stellar, and star formation rate (SFR) surface densities, as well as orbital velocities and shear. The population-averaged cloud properties in each aperture correlate strongly with both local environmental properties and host galaxy global properties. Leveraging a variable selection analysis, we find that the kpc-scale surface densities of molecular gas and SFR tend to possess the most predictive power for the population-averaged cloud properties. Once their variations are controlled for, galaxy global properties contain little additional information, which implies that the apparent galaxy-to-galaxy variations in cloud populations are likely mediated by kpc-scale environmental conditions. We further estimate a suite of important timescales from our multiwavelength measurements. The cloud-scale freefall time and turbulence crossing time are ∼5–20 Myr, comparable to previous cloud lifetime estimates. The timescales formore »
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ABSTRACT Feedback from massive stars plays a key role in molecular cloud evolution. After the onset of star formation, the young stellar population is exposed by photoionization, winds, supernovae, and radiation pressure from massive stars. Recent observations of nearby galaxies have provided the evolutionary timeline between molecular clouds and exposed young stars, but the duration of the embedded phase of massive star formation is still ill-constrained. We measure how long massive stellar populations remain embedded within their natal cloud, by applying a statistical method to six nearby galaxies at $20{-}100~\mbox{${\rm ~pc}$}$ resolution, using CO, Spitzer 24$\rm \, \mu m$, and H α emission as tracers of molecular clouds, embedded star formation, and exposed star formation, respectively. We find that the embedded phase (with CO and 24$\rm \, \mu m$ emission) lasts for 2−7 Myr and constitutes $17{-}47{{\ \rm per\ cent}}$ of the cloud lifetime. During approximately the first half of this phase, the region is invisible in H α, making it heavily obscured. For the second half of this phase, the region also emits in H α and is partially exposed. Once the cloud has been dispersed by feedback, 24$\rm \, \mu m$ emission no longer traces ongoing star formation, but remains detectable for anothermore »