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Creators/Authors contains: "Tan, Yuan"

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  1. Abstract Rapid development of transcriptome sequencing technologies has resulted in a data revolution and emergence of new approaches to study transcriptomic regulation such as alternative splicing, alternative polyadenylation, CRISPR knockout screening in addition to the regular gene expression. A full characterization of the transcriptional landscape of different groups of cells or tissues holds enormous potential for both basic science as well as clinical applications. Although many methods have been developed in the realm of differential gene expression analysis, they all geared towards a particular type of sequencing data and failed to perform well when applied in different types of transcriptomic data. To fill this gap, we offer a negative beta binomial t-test (NBBt-test). NBBt-test provides multiple functions to perform differential analyses of alternative splicing, polyadenylation, CRISPR knockout screening, and gene expression datasets. Both real and large-scale simulation data show superior performance of NBBt-test with higher efficiency, and lower type I error rate and FDR to identify differential isoforms and differentially expressed genes and differential CRISPR knockout screening genes with different sample sizes when compared against the current very popular statistical methods. An R-package implementing NBBt-test is available for downloading from CRAN ( https://CRAN.R-project.org/package=NBBttest ). 
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  2. null (Ed.)
    To directly use a CO 2 –CH 4 gas mixture for power and CO co-production by proton-conducting solid oxide fuel cells (H-SOFCs), a layer of in situ reduced La 0.6 Sr 0.2 Cr 0.85 Ni 0.15 O 3−δ (LSCrN@Ni) is fabricated on a Ni–BaZr 0.1 Ce 0.7 Y 0.1 Yb 0.1 O 3−δ (BZCYYb) anode-supported H-SOFC (H-DASC) for on-cell CO 2 dry reforming of CH 4 (DRC). For demonstrating the effectiveness of LSCrN@Ni, a cell without adding the LSCrN@Ni catalyst (H-CASC) is also studied comparatively. Fueled with H 2 , both H-CASC and H-DASC show similar stable performance with a maximum power density ranging from 0.360 to 0.816 W cm −2 at temperatures between 550 and 700 °C. When CO 2 –CH 4 is used as the fuel, the performance and stability of H-CASC decreases considerably with a maximum power density of 0.287 W cm −2 at 700 °C and a sharp drop in cell voltage from the initial 0.49 to 0.10 V within 20 h at 0.6 A cm −2 . In contrast, H-DASC demonstrates a maximum power density of 0.605 W cm −2 and a stable cell voltage above 0.65 V for 65 h. This is attributed to highly efficient on-cell DRC by LSCrN@Ni. 
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  3. null (Ed.)
  4. Abstract We report on the largest open‐shell graphenic bilayer and also the first example of triply negatively charged radical π‐dimer. Upon three‐electron reduction, bilayer nanographene fragment molecule (C96H24Ar6)2(Ar=2,6‐dimethylphenyl) (12) was transformed to a triply negatively charged species123.−, which has been characterized by single‐crystal X‐ray diffraction, electron paramagnetic resonance (EPR) spectroscopy and magnetic properties on a superconducting quantum interference device (SQUID).123.−features a 96‐center‐3‐electron (96c/3e) pancake bond with a doublet ground state, which can be thermally excited to a quartet state. It consists of 34 π‐fused rings with 96 conjugatedsp2carbon atoms. Spin frustration is observed with the frustration parameterf>31.8 at low temperatures in123.−, which indicates graphene upon reduction doping may behave as a quantum spin liquid. 
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