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Shifts in agricultural land use over the past 200 years have led to a loss of nearly 50% of existing wetlands in the USA, and agricultural activities contribute up to 65% of the nutrients that reach the Mississippi River Basin, directly contributing to biological disasters such as the hypoxic Gulf of Mexico “Dead” Zone. Federal efforts to construct and restore wetland habitats have been employed to mitigate the detrimental effects of eutrophication, with an emphasis on the restoration of ecosystem services such as nutrient cycling and retention. Soil microbial assemblages drive biogeochemical cycles and offer a unique and sensitive framework for the accurate evaluation, restoration, and management of ecosystem services. The purpose of this study was to elucidate patterns of soil bacteria within and among wetlands by developing diversity profiles from high-throughput sequencing data, link functional gene copy number of nitrogen cycling genes to measured nutrient flux rates collected from flow-through incubation cores, and predict nutrient flux using microbial assemblage composition. Soil microbial assemblages showed fine-scale turnover in soil cores collected across the topsoil horizon (0–5 cm; top vs bottom partitions) and were structured by restoration practices on the easements (tree planting, shallow water, remnant forest). Connections between soil assemblage composition, functional gene copy number, and nutrient flux rates show the potential for soil bacterial assemblages to be used as bioindicators for nutrient cycling on the landscape. In addition, the predictive accuracy of flux rates was improved when implementing deep learning models that paired connected samples across time. 

ABSTRACT Intermittent streams are characterized by significant periods of low to no flow, yet are also frequently subjected to flashy, high floods. Floods alter ecosystem function and result in variable successional patterns across the stream network. Yet, the timing of restored function after floods in intermittent stream networks is relatively unexplored. We measured recovery of stream ecosystem function using rates of gross primary production (GPP), ecosystem respiration (ER), net ecosystem production (NEP), and the primary production to respiration ratio (P/R) across eight locations in the Kings Creek drainage basin with differing preflood conditions (previously dry [intermittent] or flowing [perennial]) over a 30‐d period following a 2‐yr return interval flood. We found that all metabolic rates (GPP, ER, NEP, P/R) varied primarily by time (days since flood) and antecedent flow, but not spatial network position (i.e., drainage area). Intermittent sites exhibited high rates of ER (0.17–3.33 g dissolved oxygen [DO] m⁻²d⁻¹) following rewetting compared to perennial sites (0.03–1.17 g DO m⁻²d⁻¹), while GPP, NEP, and P/R were slower to recover and varied less between sites of differing preflood conditions. Metabolic rates were not strongly influenced by other environmental conditions. A large proportion of variation was explained by the random effect of location. Our results suggest that metabolism is temporally asynchronous and highly heterogenous across intermittent watersheds and that antecedent hydrology (drying prior to rewetting) stimulates heterotrophic activity, likely dependent on terrestrially derived organic matter and nutrient subsidies. 

Abstract Riparian zones and the streams they border provide vital habitat for organisms, water quality protection, and other important ecosystem services. These areas are under pressure from local (land use/land cover change) to global (climate change) processes. Woody vegetation is expanding in grassland riparian zones worldwide. Here we report on a decade‐long watershed‐scale mechanical removal of woody riparian vegetation along 4.5 km of stream channel in a before–after control impact experiment. Prior to this removal, woody plants had expanded into grassy riparian areas, associated with a decline in streamflow, loss of grassy plant species, and other ecosystem‐scale impacts. We confirmed some expected responses, including rapid increases in stream nutrients and sediments, disappearance of stream mosses, and decreased organic inputs to streams via riparian leaves. We were surprised that nutrient and sediment increases were transient for 3 years, that there was no recovery of stream discharge, and that areas with woody removal did not shift back to a grassland state, even when reseeded with grassland species. Rapid expansion of shrubs (Cornus drummondii,Prunus americana) in the areas where trees were removed allowed woody vegetation to remain dominant despite repeating the cutting every 2 years. Our results suggest woody expansion can fundamentally alter terrestrial and aquatic habitat connections in grasslands, resulting in inexorable movement toward a new ecosystem state. Human pressures, such as climate change, atmospheric CO₂increases, and elevated atmospheric nitrogen deposition, could continue to push the ecosystem along a trajectory that is difficult to change. Our results suggest that predicting relationships between riparian zones and the streams they border could be difficult in the face of global change in all biomes, even in well‐studied sites. 

Nitrogen deposition alters forest ecosystems particularly in high elevation, montane habitats where nitrogen deposition is greatest and continues to increase. We collected soils across an elevational (788–1940 m) gradient, encompassing both abiotic (soil chemistry) and biotic (vegetation community) gradients, at eight locations in the southern Appalachian Mountains of southwestern North Carolina and eastern Tennessee. We measured soil chemistry (total N, C, extractable PO4, soil pH, cation exchange capacity [ECEC], percent base saturation [% BS]) and dissected soil fungal communities using ITS2 metabarcode Illumina MiSeq sequencing. Total soil N, C, PO4, % BS, and pH increased with elevation and plateaued at approximately 1400 m, whereas ECEC linearly increased and C/N decreased with elevation. Fungal communities differed among locations and were correlated with all chemical variables, except PO4, whereas OTU richness increased with total N. Several ecological guilds (i.e., ectomycorrhizae, saprotrophs, plant pathogens) differed in abundance among locations; specifically, saprotroph abundance, primarily attributable to genus Mortierella, was positively correlated with elevation. Ectomycorrhizae declined with total N and soil pH and increased with total C and PO4 where plant pathogens increased with total N and decreased with total C. Our results demonstrate significant turnover in taxonomic and functional fungal groups across elevational gradients which facilitate future predictions on forest ecosystem change in the southern Appalachians as nitrogen deposition rates increase and regional temperature and precipitation regimes shift. 

Rivers and streams contribute to global carbon cycling by decomposing immense quantities of terrestrial plant matter. However, decomposition rates are highly variable and large-scale patterns and drivers of this process remain poorly understood. Using a cellulose-based assay to reflect the primary constituent of plant detritus, we generated a predictive model (81% variance explained) for cellulose decomposition rates across 514 globally distributed streams. A large number of variables were important for predicting decomposition, highlighting the complexity of this process at the global scale. Predicted cellulose decomposition rates, when combined with genus-level litter quality attributes, explain published leaf litter decomposition rates with high accuracy (70% variance explained). Our global map provides estimates of rates across vast understudied areas of Earth and reveals rapid decomposition across continental-scale areas dominated by human activities. 

River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to conduct a global-scale field experiment in greater than 1000 river and riparian sites. We found that Earth’s biomes have distinct carbon processing signatures. Slow processing is evident across latitudes, whereas rapid rates are restricted to lower latitudes. Both the mean rate and variability decline with latitude, suggesting temperature constraints toward the poles and greater roles for other environmental drivers (e.g., nutrient loading) toward the equator. These results and data set the stage for unprecedented “next-generation biomonitoring” by establishing baselines to help quantify environmental impacts to the functioning of ecosystems at a global scale.