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1. GRiMeDB: the Global River Methane Database of concentrations and fluxes

   https://doi.org/10.5194/essd-15-2879-2023  

   Stanley, Emily H.; Loken, Luke C.; Casson, Nora J.; Oliver, Samantha K.; Sponseller, Ryan A.; Wallin, Marcus B.; Zhang, Liwei; Rocher-Ros, Gerard (January 2023, Earth System Science Data)

   Abstract. Despite their small spatial extent, fluvial ecosystems play a significant role in processing and transporting carbon in aquatic networks, which results in substantial emission of methane (CH4) into the atmosphere. For this reason, considerable effort has been put into identifying patterns and drivers of CH4 concentrations in streams and rivers and estimating fluxes to the atmosphere across broad spatial scales. However, progress toward these ends has been slow because of pronounced spatial and temporal variability of lotic CH4 concentrations and fluxes and by limited data availability across diverse habitats and physicochemical conditions. To address these challenges, we present a comprehensive database of CH4 concentrations and fluxes for fluvial ecosystems along with broadly relevant and concurrent physical and chemical data. The Global River Methane Database (GriMeDB; https://doi.org/10.6073/pasta/f48cdb77282598052349e969920356ef, Stanley et al., 2023) includes 24 024 records of CH4 concentration and 8205 flux measurements from 5029 unique sites derived from publications, reports, data repositories, unpublished data sets, and other outlets that became available between 1973 and 2021. Flux observations are reported as diffusive, ebullitive, and total CH4 fluxes, and GriMeDB also includes 17 655 and 8409 concurrent measurements of concentrations and 4444 and 1521 fluxes for carbon dioxide (CO2) and nitrous oxide (N2O), respectively. Most observations are date-specific (i.e., not site averages), and many are supported by data for 1 or more of 12 physicochemical variables and 6 site variables. Site variables include codes to characterize marginal channel types (e.g., springs, ditches) and/or the presence of human disturbance (e.g., point source inputs, upstream dams). Overall, observations in GRiMeDB encompass the broad range of the climatic, biological, and physical conditions that occur among world river basins, although some geographic gaps remain (arid regions, tropical regions, high-latitude and high-altitude systems). The global median CH4 concentration (0.20 µmol L−1) and diffusive flux (0.44 mmolm-2d-1) in GRiMeDB are lower than estimates from prior site-averaged compilations, although ranges (0 to 456 µmol L−1 and −136 to 4057 mmolm-2d-1) and standard deviations (10.69 and 86.4) are greater for this larger and more temporally resolved database. Available flux data are dominated by diffusive measurements despite the recognized importance of ebullitive and plant-mediated CH4 fluxes. Nonetheless, GriMeDB provides a comprehensive and cohesive resource for examining relationships between CH4 and environmental drivers, estimating the contribution of fluvial ecosystems to CH4 emissions, and contextualizing site-based investigations. 

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2. Spatial variability of mangrove primary productivity in the neotropics

   https://doi.org/10.1002/ecs2.2841  

   Ribeiro, Rafaela de Albuquerque; Rovai, André Scarlate; Twilley, Robert R.; Castañeda‐Moya, Edward (August 2019, Ecosphere)

   Abstract Mangroves are considered one of the most productive ecosystems in the world with significant contributions as carbon sinks in the biosphere. Yet few attempts have been made to assess global patterns in mangrove net primary productivity, except for a few assumptions relating litterfall rates to variation in latitude. We combined geophysical and climatic variables to predict mangrove litterfall rates at continental scale. On a per‐area basis, carbon flux in litterfall in the neotropics is estimated at 5 MgC·ha⁻¹·yr⁻¹, between 20% and 50% higher than previous estimates. Annual carbon fixed in mangrove litterfall in the neotropics is estimated at 11.5 TgC, which suggests that current global litterfall estimates extrapolated from mean reference values may have been underestimated by at least 5%. About 5.8 TgC of this total carbon fixed in the neotropics is exported to estuaries and coastal oceans, which is nearly 30% of global carbon export by tides. We provide the first attempt to quantify and map the spatial variability of carbon fixed in litterfall in mangrove forests at continental scale in response to geophysical and climatic environmental drivers. Our results strengthen the global carbon budget for coastal wetlands, providing blue carbon scientists and coastal policy makers with a more accurate representation of the potential of mangroves to offset carbon dioxide emissions. 

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3. Temporal and Spatial Dynamics of Soil Carbon Cycling and Its Response to Environmental Change in a Northern Hardwood Forest

   https://doi.org/10.1111/gcb.70250  

   von_Fromm, Sophie_F; Olson, Connor_I; Monroe, Matthew_D; Sierra, Carlos_A; Driscoll, Charles_T; Groffman, Peter_M; Johnson, Chris_E; Raymond, Peter_A; Pries, Caitlin_Hicks (May 2025, Global Change Biology)

   ABSTRACT The timescales over which soil carbon responds to global change are a major uncertainty in the terrestrial carbon cycle. Radiocarbon measurements on archived soil samples are an important tool for addressing this uncertainty. We present time series (1969–2023) of radiocarbon measurements for litter (Oi/Oe and Oa/A) and mineral (0–10 cm) soils from the Hubbard Brook Experimental Forest, a predominantly hardwood forest in the northeastern USA. To estimate soil carbon cycling rates, we built different autonomous linear compartmental models. We found that soil litter carbon cycles on decadal timescales (Oi/Oe: ~7 years), whereas carbon at the organic‐mineral interface (Oa/A), and mineral soil (0–10 cm) carbon cycles on centennial timescales (~104 and 302 years, respectively). At the watershed‐level, the soil system appears to be at steady‐state, with no observed changes in carbon stocks or cycling rates over the study period, despite increases in precipitation, temperature, and soil pH. However, at the site‐level, the Oi/Oe is losing carbon (−15 g C m⁻² year⁻¹since 1998). The observed decline in carbon stocks can be detected when the Oi and Oe layers are modeled separately. This pattern suggests that the rapidly cycling litter layer at the smaller scale is responding to recent environmental changes. Our results highlight the importance of litter carbon as an “early‐warning system” for soil responses to environmental change, as well as the challenges of detecting gradual environmental change across spatial scales in natural forest ecosystems. 

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4. Projected 21st-century changes in marine heterotrophic bacteria under climate change

   https://doi.org/10.3389/fmicb.2023.1049579  

   Kim, Heather H; Laufkötter, Charlotte; Lovato, Tomas; Doney, Scott C; Ducklow, Hugh W (February 2023, Frontiers in Microbiology)

   Marine heterotrophicBacteria(or referred to as bacteria) play an important role in the ocean carbon cycle by utilizing, respiring, and remineralizing organic matter exported from the surface to deep ocean. Here, we investigate the responses of bacteria to climate change using a three-dimensional coupled ocean biogeochemical model with explicit bacterial dynamics as part of the Coupled Model Intercomparison Project Phase 6. First, we assess the credibility of the century-scale projections (2015–2099) of bacterial carbon stock and rates in the upper 100 m layer using skill scores and compilations of the measurements for the contemporary period (1988–2011). Second, we demonstrate that across different climate scenarios, the simulated bacterial biomass trends (2076–2099) are sensitive to the regional trends in temperature and organic carbon stocks. Bacterial carbon biomass declines by 5–10% globally, while it increases by 3–5% in the Southern Ocean where semi-labile dissolved organic carbon (DOC) stocks are relatively low and particle-attached bacteria dominate. While a full analysis of drivers underpinning the simulated changes in all bacterial stock and rates is not possible due to data constraints, we investigate the mechanisms of the changes in DOC uptake rates of free-living bacteria using the first-order Taylor decomposition. The results demonstrate that the increase in semi-labile DOC stocks drives the increase in DOC uptake rates in the Southern Ocean, while the increase in temperature drives the increase in DOC uptake rates in the northern high and low latitudes. Our study provides a systematic analysis of bacteria at global scale and a critical step toward a better understanding of how bacteria affect the functioning of the biological carbon pump and partitioning of organic carbon pools between surface and deep layers. 

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5. Simulating Global Terrestrial Carbon and Nitrogen Biogeochemical Cycles With Implicit and Explicit Representations of Soil Microbial Activity

   https://doi.org/10.1029/2023MS004156  

   Wieder, William_R; Hartman, Melannie_D; Kyker‐Snowman, Emily; Eastman, Brooke; Georgiou, Katerina; Pierson, Derek; Rocci, Katherine_S; Grandy, A_Stuart (June 2024, Journal of Advances in Modeling Earth Systems)

   Abstract Nutrient limitation is widespread in terrestrial ecosystems. Accordingly, representations of nitrogen (N) limitation in land models typically dampen rates of terrestrial carbon (C) accrual, compared with C‐only simulations. These previous findings, however, rely on soil biogeochemical models that implicitly represent microbial activity and physiology. Here we present results from a biogeochemical model testbed that allows us to investigate how an explicit versus implicit representation of soil microbial activity, as represented in the MIcrobial‐MIneral Carbon Stabilization (MIMICS) and Carnegie‐Ames‐Stanford Approach (CASA) soil biogeochemical models, respectively, influence plant productivity, and terrestrial C and N fluxes at initialization and over the historical period. When forced with common boundary conditions, larger soil C pools simulated by the MIMICS model reflect longer inferred soil organic matter (SOM) turnover times than those simulated by CASA. At steady state, terrestrial ecosystems experience greater N limitation when using the MIMICS‐CN model, which also increases the inferred SOM turnover time. Over the historical period, however, warming‐induced acceleration of SOM decomposition over high latitude ecosystems increases rates of N mineralization in MIMICS‐CN. This reduces N limitation and results in faster rates of vegetation C accrual. Moreover, as SOM stoichiometry is an emergent property of MIMICS‐CN, we highlight opportunities to deepen understanding of sources of persistent SOM and explore its potential sensitivity to environmental change. Our findings underscore the need to improve understanding and representation of plant and microbial resource allocation and competition in land models that represent coupled biogeochemical cycles under global change scenarios. 

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