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Abstract. OH reactivity (OHR) is an important control on the oxidative capacity in the atmosphere but remains poorly constrained in many environments, such asremote, rural, and urban atmospheres, as well as laboratory experiment setups under low-NO conditions. For an improved understanding of OHR, itsevolution during oxidation of volatile organic compounds (VOCs) is a major aspect requiring better quantification. We use the fully explicitGenerator of Explicit Chemistry and Kinetics of Organics in the Atmosphere (GECKO-A) model to study the OHR evolution in the NO-free photooxidationof several VOCs, including decane (an alkane), m-xylene (an aromatic), and isoprene (an alkene). Oxidation progressively produces more saturated and functionalized species. Total organic OHR (including precursor and products, OHRVOC) first increases for decane (as functionalization increases OH rate coefficients) and m-xylene (as much more reactive oxygenated alkenes are formed). For isoprene, C=C bond consumption leads to a rapid drop in OHRVOC before significant production of the first main saturated multifunctional product, i.e., isoprene epoxydiol. The saturated multifunctional species in the oxidation of different precursors have similar average OHRVOC per C atom. The latter oxidation follows a similar course for different precursors, involving fragmentation of multifunctional species to eventual oxidation of C1 and C2 fragments to CO2, leading to a similar evolution of OHRVOC per C atom. An upper limit of the total OH consumption during complete oxidation to CO2 is roughly three per C atom. We also explore the trends in radical recycling ratios. We show that differences in the evolution of OHRVOC between the atmosphere and an environmental chamber, and between the atmosphere and an oxidation flow reactor (OFR), can be substantial, with the former being even larger, but these differences are often smaller than between precursors. The Teflon wall losses of oxygenated VOCs in chambers result in large deviations of OHRVOC from atmospheric conditions, especially for the oxidation of larger precursors, where multifunctional species may suffer substantial wall losses, resulting in significant underestimation of OHRVOC. For OFR, the deviations of OHRVOC evolution from the atmospheric case are mainly due to significant OHR contribution from RO2 and lack of efficient organic photolysis. The former can be avoided by lowering the UV lamp setting in OFR, while the latter is shown to be very difficult to avoid. However, the former may significantly offset the slowdown in fragmentation of multifunctional species due to lack of efficient organic photolysis. 

Abstract. Oxidation flow reactors (OFRs) are a promising complement toenvironmental chambers for investigating atmospheric oxidation processes andsecondary aerosol formation. However, questions have been raised about howrepresentative the chemistry within OFRs is of that in the troposphere. Weinvestigate the fates of organic peroxy radicals (RO₂), which playa central role in atmospheric organic chemistry, in OFRs and environmentalchambers by chemical kinetic modeling and compare to a variety of ambientconditions to help define a range of atmospherically relevant OFR operatingconditions. For most types of RO₂, their bimolecular fates in OFRsare mainly RO₂+HO₂ and RO₂+NO, similar to chambers andatmospheric studies. For substituted primary RO₂ and acylRO₂, RO₂+RO₂ can make a significant contribution tothe fate of RO₂ in OFRs, chambers and the atmosphere, butRO₂+RO₂ in OFRs is in general somewhat less important than inthe atmosphere. At high NO, RO₂+NO dominates RO₂ fate inOFRs, as in the atmosphere. At a high UV lamp setting in OFRs,RO₂+OH can be a major RO₂ fate and RO₂isomerization can be negligible for common multifunctional RO₂,both of which deviate from common atmospheric conditions. In the OFR254operation mode (for which OH is generated only from the photolysis of addedO₃), we cannot identify any conditions that can simultaneouslyavoid significant organic photolysis at 254 nm and lead to RO₂lifetimes long enough (∼ 10 s) to allow atmospherically relevantRO₂ isomerization. In the OFR185 mode (for which OH is generatedfrom reactions initiated by 185 nm photons), high relative humidity, low UVintensity and low precursor concentrations are recommended for theatmospherically relevant gas-phase chemistry of both stable species andRO₂. These conditions ensure minor or negligible RO₂+OHand a relative importance of RO₂ isomerization in RO₂fate in OFRs within $\sim \times \mathrm{2}$ of that in the atmosphere. Under theseconditions, the photochemical age within OFR185 systems can reach a fewequivalent days at most, encompassing the typical ages for maximum secondaryorganic aerosol (SOA) production. A small increase in OFR temperature mayallow the relative importance of RO₂ isomerization to approach theambient values. To study the heterogeneous oxidation of SOA formed underatmospherically relevant OFR conditions, a different UV source with higherintensity is needed after the SOA formation stage, which can be done withanother reactor in series. Finally, we recommend evaluating the atmosphericrelevance of RO₂ chemistry by always reporting measured and/orestimated OH, HO₂, NO, NO₂ and OH reactivity (or at leastprecursor composition and concentration) in all chamber and flow reactorexperiments. An easy-to-use RO₂ fate estimator program is includedwith this paper to facilitate the investigation of this topic in futurestudies.

 

The products of the Cl‐atom‐initiated oxidation of hydroxyacetone (HYAC, CH₃C(O)CH₂OH) have been examined under conditions relevant to the earth's lower atmosphere. Over the range of temperatures studied (252‐298 K), in the absence of NO_x, methylglyoxal (CH₃C(=O)CH=O, MGLY) was formed with a primary yield >84% (96 ± 9% at 298 K), while in the presence of elevated NO_x, MGLY and formic acid were both formed as major primary products. In contrast to a previous study, acetic acid was not identified as a major primary product under the conditions studied. The results are quantitatively interpreted from a consideration of the formation of a stabilized CH₃C(O)CH(OH)OO• radical, either in a ≈50% yield from the addition of O₂to CH₃C(O)CH•(OH) or in 100% yield from the addition of HO₂to MGLY. At high temperature and low NO_x, decomposition of the stabilized CH₃C(O)CH(OH)OO• radical to MGLY is favored, while lower temperatures and conditions of high NO_xfavor bimolecular reactions of the stabilized radical, with subsequent production of formic acid. Analysis of the data allows for a semiquantitative determination ofK₃ = (2.9 ± 0.4) × 10⁻¹⁶cm³molecule⁻¹, for the HO₂+ MGLY ↔ CH₃C(O)CH(OH)OO• equilibrium process at 298 K and a roughly order of magnitude increase inK₃at 252 K.

 

Abstract. The GoAmazon 2014/5 field campaign took place in Manaus, Brazil, and allowed the investigation of the interaction between background-level biogenic air masses and anthropogenic plumes.We present in this work a box model built to simulate the impact of urban chemistry on biogenic secondary organic aerosol (SOA) formation and composition.An organic chemistry mechanism is generated with the Generator for Explicit Chemistry and Kinetics of Organics in the Atmosphere (GECKO-A) to simulate the explicit oxidation of biogenic and anthropogenic compounds.A parameterization is also included to account for the reactive uptake of isoprene oxidation products on aqueous particles.The biogenic emissions estimated from existing emission inventories had to be reduced to match measurements.The model is able to reproduce ozone and NOx for clean and polluted situations.The explicit model is able to reproduce background case SOA mass concentrations but does not capture the enhancement observed in the urban plume.The oxidation of biogenic compounds is the major contributor to SOA mass.A volatility basis set (VBS) parameterization applied to the same cases obtains better results than GECKO-A for predicting SOA mass in the box model.The explicit mechanism may be missing SOA-formation processes related to the oxidation of monoterpenes that could be implicitly accounted for in the VBS parameterization. 

ABSTRACT To explore the various couplings across space and time and between ecosystems in a consistent manner, atmospheric modeling is moving away from the fractured limited-scale modeling strategy of the past toward a unification of the range of scales inherent in the Earth system. This paper describes the forward-looking Multi-Scale Infrastructure for Chemistry and Aerosols (MUSICA), which is intended to become the next-generation community infrastructure for research involving atmospheric chemistry and aerosols. MUSICA will be developed collaboratively by the National Center for Atmospheric Research (NCAR) and university and government researchers, with the goal of serving the international research and applications communities. The capability of unifying various spatiotemporal scales, coupling to other Earth system components, and process-level modularization will allow advances in both fundamental and applied research in atmospheric composition, air quality, and climate and is also envisioned to become a platform that addresses the needs of policy makers and stakeholders. 

Reactive chlorine and bromine species emitted from snow and aerosols can significantly alter the oxidative capacity of the polar boundary layer. However, halogen production mechanisms from snow remain highly uncertain, making it difficult for most models to include descriptions of halogen snow emissions and to understand the impact on atmospheric chemistry. We investigate the influence of Arctic halogen emissions from snow on boundary layer oxidation processes using a one‐dimensional atmospheric chemistry and transport model (PACT‐1D). To understand the combined impact of snow emissions and boundary layer dynamics on atmospheric chemistry, we model Cl₂and Br₂primary emissions from snow and include heterogeneous recycling of halogens on both snow and aerosols. We focus on a 2‐day case study from the 2009 Ocean‐Atmosphere‐Sea Ice‐Snowpack campaign at Utqiaġvik, Alaska. The model reproduces both the diurnal cycle and high quantity of Cl₂observed, along with the measured concentrations of Br₂, BrO, and HOBr. Due to the combined effects of emissions, recycling, vertical mixing, and atmospheric chemistry, reactive chlorine is typically confined to the lowest 15 m of the atmosphere, while bromine can impact chemistry up to and above the surface inversion height. Upon including halogen emissions and recycling, the concentration of HO_x(HO_x = OH + HO₂) at the surface increases by as much as a factor of 30 at mid‐day. The change in HO_xdue to halogen chemistry, as well as chlorine atoms derived from snow emissions, significantly reduce volatile organic compound lifetimes within a shallow layer near the surface.

 

The Community Earth System Model version 2 (CESM2) includes a detailed representation of chemistry throughout the atmosphere in the Community Atmosphere Model with chemistry and Whole Atmosphere Community Climate Model configurations. These model configurations use the Model for Ozone and Related chemical Tracers (MOZART) family of chemical mechanisms, covering the troposphere, stratosphere, mesosphere, and lower thermosphere. The new MOZART tropospheric chemistry scheme (T1) has a number of updates over the previous version (MOZART‐4) in CESM, including improvements to the oxidation of isoprene and terpenes, organic nitrate speciation, and aromatic speciation and oxidation and thus improved representation of ozone and secondary organic aerosol precursors. An evaluation of the present‐day simulations of CESM2 being provided for Climate Model Intercomparison Project round 6 (CMIP6) is presented. These simulations, using the anthropogenic and biomass burning emissions from the inventories specified for CMIP6, as well as online calculation of emissions of biogenic compounds, lightning NO, dust, and sea salt, indicate an underestimate of anthropogenic emissions of a variety of compounds, including carbon monoxide and hydrocarbons. The simulation of surface ozone in the southeast United States is improved over previous model versions, largely due to the improved representation of reactive nitrogen and organic nitrate compounds resulting in a lower ozone production rate than in CESM1 but still overestimates observations in summer. The simulation of tropospheric ozone agrees well with ozonesonde observations in many parts of the globe. The comparison of NO_xand PAN to aircraft observations indicates the model simulates the nitrogen budget well.