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ABSTRACT Hybridization occurs when different species mate and produce offspring. Although hybridization can have negative consequences for cognitive performance, the mechanisms underlying those effects are still poorly understood. A fundamental physiological process found in all animals studied to date that could be disrupted in hybrids is sleep. Given that mechanisms that occur within the brain during sleep may help maintain optimal cognitive performance, here we outline the potential impacts of hybridization on sleep and cognition. We suggest that sleep loss caused by hybridization could lead to negative impacts for neural and molecular mechanisms (e.g. neurogenesis, synaptic plasticity, and brain gene expression) associated with cognition, which may help explain some of the cognitive deficiency recently observed in hybrid birds. However, we acknowledge that these mechanisms may instead be directly impacted by hybridization, which in turn could also disrupt sleep with similar negative consequences for cognition. Limitations in sleep processes apparent in hybrids might influence hybrid fitness and therefore act as a post‐zygotic isolating barrier. 

Abstract Determining the genetic architecture of traits involved in adaptation and speciation is one of the key components of understanding the evolutionary mechanisms behind biological diversification. Hybrid zones provide a unique opportunity to use genetic admixture to identify traits and loci contributing to partial reproductive barriers between taxa. Many studies have focused on the temporal dynamics of hybrid zones, but geographical variation in hybrid zones that span distinct ecological contexts has received less attention. We address this knowledge gap by analyzing hybridization and introgression between black-capped and Carolina chickadees in two geographically remote transects across their extensive hybrid zone, one located in eastern and one in central North America. Previous studies demonstrated that this hybrid zone is moving northward as a result of climate change but is staying consistently narrow due to selection against hybrids. In addition, the hybrid zone is moving ~5× slower in central North America compared to more eastern regions, reflecting continent-wide variation in the rate of climate change. We use whole genome sequencing of 259 individuals to assess whether variation in the rate of hybrid zone movement is reflected in patterns of hybridization and introgression, and which genes and genomic regions show consistently restricted introgression in distinct ecological contexts. Our results highlight substantial similarities between geographically remote transects and reveal large Z-linked chromosomal rearrangements that generate measurable differences in the degree of gene flow between transects. We further use simulations and analyses of climatic data to examine potential factors contributing to continental-scale nuances in selection pressures. We discuss our findings in the context of speciation mechanisms and the importance of sex chromosome inversions in chickadees and other species. 

Abstract As DNA sequencing technology continues to rapidly improve, studies investigating the microbial communities of host organisms (i.e., microbiota) are becoming not only more popular but also more financially accessible. Across many taxa, microbiomes can have important impacts on organismal health and fitness. To evaluate the microbial community composition of a particular microbiome, microbial DNA must be successfully extracted. Fecal samples are often easy to collect and are a good source of gut microbial DNA. Additionally, interest in the avian preen gland microbiome is rapidly growing, due to the importance of preen oil for many aspects of avian life. Microbial DNA extractions from avian fecal and preen oil samples present multiple challenges, however. Here, we describe a modified PrepMan Ultra Sample Preparation Reagent microbial DNA extraction method that is less expensive than other commonly used methodologies and is highly effective for both fecal and preen oil samples collected from a broad range of avian species. We expect our method will facilitate microbial DNA extractions from multiple avian microbiome reservoirs, which have previously proved difficult and expensive. Our method therefore increases the feasibility of future studies of avian host microbiomes. 

Abstract Understanding how mating cues promote reproductive isolation upon secondary contact is important in describing the speciation process in animals. Divergent chemical cues have been shown to act in reproductive isolation across many animal taxa. However, such cues have been overlooked in avian speciation, particularly in passerines, in favor of more traditional signals such as song and plumage. Here, we aim to test the potential for odor to act as a mate choice cue, and therefore contribute to premating reproductive isolation between the black‐capped (Poecile atricapillus) and Carolina chickadee (P. carolinensis) in eastern Pennsylvania hybrid zone populations. Using gas chromatography–mass spectrometry, we document significant species differences in uropygial gland oil chemistry, especially in the ratio of ester to nonester compounds. We also show significant preferences for conspecific over heterospecific odor cues in wild chickadees using a Y‐maze design. Our results suggest that odor may be an overlooked but important mating cue in these chickadees, potentially promoting premating reproductive isolation. We further discuss several promising avenues for future research in songbird olfactory communication and speciation. 

Olfaction is an important sense that has contributed to reproductive isolation and speciation in many taxa. However, in birds, olfaction and its potential role in communication has historically been neglected. Thus, what role olfaction plays in avian speciation is mostly unknown. Here, we aim to guide future research by highlighting the likely potential for olfaction to contribute to reproductive isolation and speciation in birds. First, we detail the best-understood example found thus far that is consistent with reproductive isolation by olfaction in birds: black-capped and Carolina chickadees. These species show interspecific differences in preen oil chemistry and conspecific odour preferences within their natural hybrid zone. We then suggest a number of promising avenues for future research and the kinds of systems, approaches and evidence that would help to advance this severely understudied area. In sum, the growing body of research into the chemical ecology of birds suggests an important role of olfaction in many areas of avian life. Future research will be necessary to determine to what extent olfaction contributes to the formation and maintenance of species boundaries in birds.