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Abstract The Eastern Pacific leatherback turtle population (Dermochelys coriacea) has declined precipitously in recent years. One of the major causes is bycatch from coastal and pelagic fisheries. Fisheries observations are often underutilized, despite strong potential for this data to affect policy. In this study, we created a spatiotemporal species distribution model that synthesizes fisheries observations with remotely sensed environmental data. The model will be developed into a dynamic management tool for the Eastern Pacific leatherback population. We obtained leatherback observation data from multiple fisheries that have operated in the Southeast Pacific (2001–2018). A dynamic Poisson point process model was applied to predict leatherback intensity (observation per unit area) as a function of dynamic environmental covariates. This model serves as a tool for application by managers and stakeholders toward the reduction of leatherback turtle bycatch and provides a modeling framework for analyzing fisheries observations from other vulnerable populations and species. 

Abstract Tidal marshes form at the confluence between estuarine and marine environments where tidal movement regulates their developmental processes. Here, we investigate how the interplay between tides, channel morphology, and vegetation affect sediment dynamics in a low energy tidal marsh at the Paul S. Sarbanes Ecosystem Restoration Project at Poplar Island. Poplar Island is an active restoration site where fine‐grained material dredged from navigation channels in the upper Chesapeake Bay are being used to restore remote tidal marsh habitat toward the middle bay (Maryland, USA). Tidal currents were measured over multiple tidal cycles in the inlets and tidal creeks of one marsh at Poplar Island, Cell 1B, using Acoustic Doppler Current Profilers (ADCP) to estimate water fluxes throughout the marsh complex. Sediment fluxes were estimated using acoustic backscatter recorded by ADCPs and validated against total suspended solid measurements taken on site. A high‐resolution geomorphic survey was conducted to capture channel cross sections and tidal marsh morphology. We integrated simple numerical models built in Delft3d with empirical observations to identify which eco‐geomorphological factors influence sediment distribution in various channel configurations with differing vegetative characteristics. Channel morphology influences flood‐ebb dominance in marshes, where deep, narrow channels promote high tidal velocities and incision, increasing sediment suspension and reducing resilience in marshes at Poplar Island. Our numerical models suggest that accurately modelling plant phenology is vital for estimating sediment accretion rates. In‐situ observations indicate that Poplar Island marshes are experiencing erosion typical for many Chesapeake Bay islands. Peak periods of sediment suspension frequently coincide with the largest outflows of water during ebb tides resulting in large sediment deficits. Ebb dominance (net sediment export) in tidal marshes is likely amplified by sea‐level rise and may lower marsh resilience. We couple field observations with numerical models to understand how tidal marsh morphodynamics contribute to marsh resilience. © 2019 John Wiley & Sons, Ltd. 

Small crustaceans, such as the mysid Neomysis americana (S.I. Smith 1873), are a central component of coastal food webs and, while generally tolerant of a wide-range of environmental conditions, can be negatively affected by poor water quality. In this study, daily growth rates (GRD) and clutch size metrics of N. americana collected during the early and late summer of 2018–2019 were evaluated for the Choptank and Patuxent rivers, major tributaries of Chesapeake Bay known to exhibit different oxygenation regimes. Genetic variation in the mitochondrial CO1 locus was assessed to evaluate the potential intraspecific genetic structure within Chesapeake Bay. CO1 haplotype network analysis, phylogenetic analysis, and analysis of molecular variance revealed no genetic differences between Choptank and Patuxent river populations, with all Chesapeake Bay individuals belonging to a single genetic lineage (lineage C), of the N. americana cryptic species complex. Total and size-specific clutch size were approximately 18% and 53% higher, respectively, in the normoxic Choptank River during the early summer. Embryos within the marsupium, corrected for clutch size and female length, were consistently larger in the Choptank River during later larval development stages. Size-specific clutch size showed correlations with bottom water dissolved oxygen concentration (positive) and water temperature (negative). GRD did not differ between rivers or seasonally but juveniles grew twice as fast as adults. Given that all individuals genotyped from both rivers belonged to lineage C of the N. americana cryptic species complex, it is hypothesized that bottom water hypoxia (rather than genetic differentiation) is responsible for reduced clutch size in the Patuxent River. Our findings build on other recent work by providing evidence of a direct, negative relationship between hypoxia and local population dynamics of N. americana, a key ecological component of Chesapeake Bay’s food web. 

Rates of ecosystem metabolic properties, such as plankton community respiration, can be used as an assessment of the eutrophication state of a waterbody and are the primary biogeochemical rates causing oxygen depletion in coastal waters. However, given the additional labor involved in measuring biogeochemical rate processes, few monitoring programs regularly measure these properties and thus few long-term monitoring records of plankton respiration exist. An eight-year, biweekly plankton community respiration rate time series was analyzed as part of a monitoring program situated in the lower Patuxent River estuary, a tributary of Chesapeake Bay. We found that particulate nutrients (nitrogen and phosphorus) were the most highly correlated co-variates with respiration rate. Additionally, statistical and kinetic models including variables both water temperature and particulate nitrogen were able to explain 74% of the variability in respiration. Over the long-term record, both particulate nutrients and respiration rate were elevated when measured at higher tides. Separate measurements of respiration rate during ten consecutive days and during high and low tide on three separate days also support the enhancement of respiration with high tide. The enhancement was likely due to the import of particulate nutrients from the highly productive mid-bay region. This analysis of the longest consistently measured community respiration rate dataset in Chesapeake Bay has implications for how to interpret long-term records of measurements made at fixed locations in estuaries. 

Fundamental differences in DOM composition at the Bermuda Atlantic time series (BATS) stationversusthe Hawai’i time series station ALOHA. 

Engineered aeration is one solution for increasing oxygen concentrations in highly eutrophic estuaries that undergo seasonal hypoxia. Although there are various designs for engineered aeration, all approaches involve either destratification of the water column or direct injection of oxygen or air through fine bubble diffusion. To date, the effect of either approach on estuarine methane dynamics remains unknown. Here we tested the hypotheses that 1) bubble aeration will strip the water of methane and enhance the air-water methane flux to the atmosphere and 2) the addition of oxygen to the water column will enhance aerobic methane oxidation in the water column and potentially offset the air-water methane flux. These hypotheses were tested in Rock Creek, Maryland, a shallow-water sub-estuary to the Chesapeake Bay, using controlled, ecosystem-scale deoxygenation experiments where the water column and sediments were sampled in mid-summer, when aerators were ON, and then 1, 3, 7, and 13 days after the aerators were turned OFF. Experiments were performed under two system designs, large bubble and fine bubble approaches, using the same observational approach that combined discrete water sampling, long term water samplers (OsmoSamplers) and sediment porewater profiles. Regardless of aeration status, methane concentrations reached as high as 1,500 nmol L⁻¹in the water column during the experiments and remained near 1,000 nmol L⁻¹through the summer and into the fall. Since these concentrations are above atmospheric equilibrium of 3 nmol L⁻¹, these data establish the sub-estuary as a source of methane to the atmosphere, with a maximum atmospheric flux as high as 1,500 µmol m⁻²d⁻¹, which is comparable to fluxes estimated for other estuaries. Air-water methane fluxes were higher when the aerators were ON, over short time frames, supporting the hypothesis that aeration enhanced the atmospheric methane flux. The fine-bubble approach showed lower air-water methane fluxes compared to the larger bubble, destratification system. We found that the primary source of the methane was the sediments, however,in situmethane production or an upstream methane source could not be ruled out. Overall, our measurements of methane concentrations were consistently high in all times and locations, supporting consistent methane flux to the atmosphere. 

Bottlenose dolphins ( Tursiops truncatus ) are migratory marine mammals that live in both open-ocean and coastal habitats. Although widely studied, little is known about their occurrence patterns in the highly urbanized estuary of the Chesapeake Bay, USA. The goal of this study was to establish the spatial and temporal distribution of bottlenose dolphins throughout this large estuarine system and use statistical modeling techniques to determine how their distribution relates to environmental factors. Three years (April-October 2017–2019) of dolphin sighting reports from a citizen-science database, Chesapeake DolphinWatch, were analyzed. The dolphins had a distinct temporal pattern, most commonly sighted during summer months, peaking in July. This pattern of observed occurrence was confirmed with systematic, passive acoustic detections of dolphin echolocation clicks from local hydrophones. Using spatially-exclusive Generalized Additive Models (GAM), dolphin presence was found to be significantly correlated to spring tidal phase, warm water temperature (24–30°C), and salinities ranging from 6–22 PPT. We were also able to use these GAMs to predict dolphin occurrence in the Bay. These predictions were statistically correlated to the actual number of dolphin sighting reported to Chesapeake DolphinWatch during that time. These models for dolphin presence can be implemented as a predictive tool for species occurrence and inform management of this protected species within the Chesapeake Bay. 

Abstract The mysid Neomysis americana (Smith, 1873) is native to shallow shelf waters and estuaries of the western Atlantic coast of North America. Despite the important role mysids such as N. americana play in estuarine ecosystems as both consumers and as prey for higher trophic levels, there is limited information on how metabolism influences their spatial ecology and habitat requirements. In tributaries of Chesapeake Bay, MD, USA, previous research has shown that summer water temperatures can approach the lethal upper tolerance limit for N. americana. We measured the per capita metabolic rate (µgO2 min–1) of N. americana from the upper Patuxent River near Benedict, MD, a tributary of Chesapeake Bay in the laboratory to evaluate the metabolic response to salinity and temperature conditions that mysids experience in natural habitats. Sex-specific and diel patterns in metabolic rate were quantified. Metabolic rates did not differ between night and day and there was no significant difference in metabolic rate between males and females, exclusive of gravid females. Metabolic rates were lowest in salinity treatments of 2 and 8 at 29 °C, and highest in the salinity 2 treatment at 22 °C. Only temperature had a statistically significant, albeit unexpected, effect. This study shows that the metabolic response of N. americana to temperature and salinity conditions is complex and plastic, and that metabolic rates can vary 3–4 fold within realistic summer temperature and salinity conditions. As environmental conditions continue to change, understanding metabolic response of mysids to realistic salinity and temperature conditions is necessary for understanding their distributions in temperate estuaries.