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Abstract Protection from direct human impacts can safeguard marine life, yet ocean warming crosses marine protected area boundaries. Here, we test whether protection offers resilience to marine heatwaves from local to network scales. We examine 71,269 timeseries of population abundances for 2269 reef fish species surveyed in 357 protected versus 747 open sites worldwide. We quantify the stability of reef fish abundance from populations to metacommunities, considering responses of species and functional diversity including thermal affinity of different trophic groups. Overall, protection mitigates adverse effects of marine heatwaves on fish abundance, community stability, asynchronous fluctuations and functional richness. We find that local stability is positively related to distance from centers of high human density only in protected areas. We provide evidence that networks of protected areas have persistent reef fish communities in warming oceans by maintaining large populations and promoting stability at different levels of biological organization. 

Abstract Retention of surface water parcels can benefit coastal ecosystems by increasing the residence times of nutrient‐rich waters and marine larvae but can also negatively impact marine life and human health by concentrating oil and other pollutants. To investigate the spatial patterns, temporal variability, and drivers of retention, surface water parcel retention is quantified using particle simulations forced by high‐frequency radar surface current observations in the Santa Barbara Channel (SBC), California, USA. Retention is defined here as the time a particle remains within 20 km of its starting location and typical retention times are ∼4 days. However, the mechanisms driving retention differ across the SBC. In the central SBC, high retention times are driven by a persistent cyclonic eddy, while in the eastern SBC, high retention times are due to weak oscillatory flow. Areas in the western SBC outside of the cyclonic eddy exhibit the shortest mean retention times (<2 days) due to sustained horizontal advection. Stepwise regression is used to assess the drivers of interannual retention anomalies at sub‐SBC scales and is able to predict the greatest (least) amount of retention variability in the western (eastern) SBC. The presence of coherent eddies, both cyclonic and anticyclonic, is a dominant driver of high retention channel‐wide, while some factors such as wind stress and along‐channel flow have counteracting effects on retention at sub‐channel scales. 

Abstract Biodiversity can stabilize ecological communities through biological insurance, but climate and other environmental changes may disrupt this process via simultaneous ecosystem destabilization and biodiversity loss. While changes to diversity–stability relationships (DSRs) and the underlying mechanisms have been extensively explored in terrestrial plant communities, this topic remains largely unexplored in benthic marine ecosystems that comprise diverse assemblages of producers and consumers. By analyzing two decades of kelp forest biodiversity survey data, we discovered changes in diversity, stability, and their relationships at multiple scales (biological organizational levels, spatial scales, and functional groups) that were linked with the most severe marine heatwave ever documented in the North Pacific Ocean. Moreover, changes in the strength of DSRs during/after the heatwave were more apparent among functional groups than both biological organizational levels (population vs. ecosystem levels) and spatial scales (local vs. broad scales). Specifically, the strength of DSRs decreased for fishes, increased for mobile invertebrates and understory algae, and were unchanged for sessile invertebrates during/after the heatwave. Our findings suggest that biodiversity plays a key role in stabilizing marine ecosystems, but the resilience of DSRs to adverse climate impacts primarily depends on the functional identities of ecological communities. 

Abstract BackgroundEpigenetic processes are proposed to be a mechanism regulating gene expression during phenotypic plasticity. However, environmentally induced changes in DNA methylation exhibit little-to-no association with differential gene expression in metazoans at a transcriptome-wide level. It remains unexplored whether associations between environmentally induced differential methylation and expression are contingent upon other epigenomic processes such as chromatin accessibility. We quantified methylation and gene expression in larvae of the purple sea urchinStrongylocentrotus purpuratusexposed to different ecologically relevant conditions during gametogenesis (maternal conditioning) and modeled changes in gene expression and splicing resulting from maternal conditioning as functions of differential methylation, incorporating covariates for genomic features and chromatin accessibility. We detected significant interactions between differential methylation, chromatin accessibility, and genic feature type associated with differential expression and splicing. ResultsDifferential gene body methylation had significantly stronger effects on expression among genes with poorly accessible transcriptional start sites while baseline transcript abundance influenced the direction of this effect. Transcriptional responses to maternal conditioning were 4–13 × more likely when accounting for interactions between methylation and chromatin accessibility, demonstrating that the relationship between differential methylation and gene regulation is partially explained by chromatin state. ConclusionsDNA methylation likely possesses multiple associations with gene regulation during transgenerational plasticity inS. purpuratusand potentially other metazoans,but its effects are dependent on chromatin accessibility and underlying genic features. 

Abstract Spatial synchrony is the tendency for population fluctuations to be correlated among different locations. This phenomenon is a ubiquitous feature of population dynamics and is important for ecosystem stability, but several aspects of synchrony remain unresolved. In particular, the extent to which any particular mechanism, such as dispersal, contributes to observed synchrony in natural populations has been difficult to determine. To address this gap, we leveraged recent methodological improvements to determine how dispersal structures synchrony in giant kelp (Macrocystis pyrifera), a global marine foundation species that has served as a useful system for understanding synchrony. We quantified population synchrony and fecundity with satellite imagery across 11 years and 880 km of coastline in southern California, USA, and estimated propagule dispersal probabilities using a high‐resolution ocean circulation model. Using matrix regression models that control for the influence of geographic distance, resources (seawater nitrate), and disturbance (destructive waves), we discovered that dispersal was an important driver of synchrony. Our findings were robust to assumptions about propagule mortality during dispersal and consistent between two metrics of dispersal: (1) the individual probability of dispersal and (2) estimates of demographic connectivity that incorporate fecundity (the number of propagules dispersing). We also found that dispersal and environmental conditions resulted in geographic clusters with distinct patterns of synchrony. This study is among the few to statistically associate synchrony with dispersal in a natural population and the first to do so in a marine organism. The synchronizing effects of dispersal and environmental conditions on foundation species, such as giant kelp, likely have cascading effects on the spatial stability of biodiversity and ecosystem function. 

Abstract Marine protected areas (MPAs) globally serve conservation and fisheries management goals, generating positive effects in some marine ecosystems. Surf zones and sandy beaches, critical ecotones bridging land and sea, play a pivotal role in the life cycles of numerous fish species and serve as prime areas for subsistence and recreational fishing. Despite their significance, these areas remain understudied when evaluating the effects of MPAs. We compared surf zone fish assemblages inside and outside MPAs across 3 bioregions in California (USA). Using seines and baited remote underwater videos (BRUVs), we found differences in surf zone fish inside and outside MPAs in one region. Inside south region MPAs, we observed higher abundance (Tukey's honest significant difference [HSD] = 0.83,p = 0.0001) and richness (HSD = 0.22,p = 0.0001) in BRUVs and greater biomass (HSD = 0.32,p = 0.0002) in seine surveys compared with reference sites. Selected live‐bearing, fished taxa were positively affected by MPAs. Elasmobranchs displayed greater abundance in BRUV surveys and higher biomass in seine surveys inside south region MPAs (HSD = 0.35,p = 0.0003 and HSD = 0.23,p = 0.008, respectively). Although we observed no overall MPA signal for Embiotocidae, abundances of juvenile and large adult barred surfperch (Amphistichus argenteus), the most abundant fished species, were higher inside MPAs (K–S testD = 0.19,p < 0.0001). Influence of habitat characteristics on MPA performance indicated surf zone width was positively associated with fish abundance and biomass but negatively associated with richness. The south region had the largest positive effect size on all MPA performance metrics. Our findings underscored the variability in species richness and composition across regions and survey methods that significantly affected differences observed inside and outside MPAs. A comprehensive assessment of MPA performance should consider specific taxa, their distribution, and the effects of habitat factors and geography. 

Abstract Increased occurrence, size, and intensity of fire result in significant but variable changes to hydrology and material retention in watersheds with concomitant effects on stream biogeochemistry. In arid regions, seasonal and episodic precipitation results in intermittency in flows connecting watersheds to recipient streams that can delay the effects of fire on stream chemistry. We investigated how the spatial extent of fire within watersheds interacts with variability in amount and timing of precipitation to influence stream chemistry of three forested, montane watersheds in a monsoonal climate and four coastal, chaparral watersheds in a Mediterranean climate. We applied state-space models to estimate effects of precipitation, fire, and their interaction on stream chemistry up to five years following fire using 15 + years of monthly observations. Precipitation alone diluted specific conductance and flushed nitrate and phosphate to Mediterranean streams. Fire had positive and negative effects on specific conductance in both climates, whereas ammonium and nitrate concentrations increased following fire in Mediterranean streams. Fire and precipitation had positive interactive effects on specific conductance in monsoonal streams and on ammonium in Mediterranean streams. In most cases, the effects of fire and its interaction with precipitation persisted or were lagged 2–5 years. These results suggest that precipitation influences the timing and intensity of the effects of fire on stream solute dynamics in aridland watersheds, but these responses vary by climate, solute, and watershed characteristics. Time series models were applied to data from long-term monitoring that included observations before and after fire, yielding estimated effects of fire on aridland stream chemistry. This statistical approach captured effects of local-scale temporal variation, including delayed responses to fire, and may be used to reduce uncertainty in predicted responses of water quality under changing fire and precipitation regimes of arid lands. 

Abstract A network of marine reserves can enhance yield in depleted fisheries by protecting populations, particularly large, old spawners that supply larvae for interspersed fishing grounds. The ability of marine reserves to enhance sustainable fisheries is much less evident. We report empirical evidence of a marine reserve network improving yield regionally for a sustainable spiny lobster fishery, apparently through the spillover of adult lobsters and behavioral adaptation by the fishing fleet. Results of a Before-After, Control-Impact analysis found catch, effort, and Catch-Per-Unit Effort increased after the establishment of marine reserves in the northern region of the fishery where fishers responded by fishing intensively at reserve borders, but declined in the southern region where they vacated once productive fishing grounds. The adaptation of the northern region of the fishery may have been aided by a history of collaboration between fishers, scientists, and managers, highlighting the value of collaborative research and education programs for preparing fisheries to operate productively within a seascape that includes a large marine reserve network. 

Abstract Giant kelp (Macrocystis pyrifera) forests are common along the California coast. Attached on the rocky bottom at depths of approximately 5–25 m, the kelp, when mature, spans the water column and develops dense, buoyant canopies that interact with waves and currents. We present two novel results based on observations of surface gravity waves in a kelp forest in Point Loma, California. First, we report short wave (1–3 s) attenuation in kelp, quantified by an exponential decay coefficient —comparable to the dampening effect of sea ice. Second, we identify seasonal and tidal changes in attenuation, peaking mid‐summer with maximum kelp cover, and during low tide when a greater proportion of the fronds are at the surface. Thus, the naturally occurring surface canopies of kelp forests can act as temporally varying, high‐frequency filters of wave energy. 

IntroductionChanges in temperature can fundamentally transform how species interact, causing wholesale shifts in ecosystem dynamics and stability. Yet we still have a limited understanding of how temperature-dependence in physiology drives temperature-dependence in species-interactions. For predator-prey interactions, theory predicts that increases in temperature drive increases in metabolism and that animals respond to this increased energy expenditure by ramping up their food consumption to meet their metabolic demand. However, if consumption does not increase as rapidly with temperature as metabolism, increases in temperature can ultimately cause a reduction in consumer fitness and biomass via starvation. MethodsHere we test the hypothesis that increases in temperature cause more rapid increases in metabolism than increases in consumption using the California spiny lobster (Panulirus interruptus) as a model system. We acclimated individual lobsters to temperatures they experience sacross their biogeographic range (11, 16, 21, or 26°C), then measured whether lobster consumption rates are able to meet the increased metabolic demands of rising temperatures. Results and discussionWe show positive effects of temperature on metabolism and predation, but in contrast to our hypothesis, rising temperature caused lobster consumption rates to increase at a faster rate than increases in metabolic demand, suggesting that for the mid-range of temperatures, lobsters are capable of ramping up consumption rates to increase their caloric demand. However, at the extreme ends of the simulated temperatures, lobster biology broke down. At the coldest temperature, lobsters had almost no metabolic activity and at the highest temperature, 33% of lobsters died. Our results suggest that temperature plays a key role in driving the geographic range of spiny lobsters and that spatial and temporal shifts in temperature can play a critical role in driving the strength of species interactions for a key predator in temperate reef ecosystems.