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Accurate and cost-effective quantification of the carbon cycle for agroecosystems at decision-relevant scales is critical to mitigating climate change and ensuring sustainable food production. However, conventional process-based or data-driven modeling approaches alone have large prediction uncertainties due to the complex biogeochemical processes to model and the lack of observations to constrain many key state and flux variables. Here we propose a Knowledge-Guided Machine Learning (KGML) framework that addresses the above challenges by integrating knowledge embedded in a process-based model, high-resolution remote sensing observations, and machine learning (ML) techniques. Using the U.S. Corn Belt as a testbed, we demonstrate that KGML can outperform conventional process-based and black-box ML models in quantifying carbon cycle dynamics. Our high-resolution approach quantitatively reveals 86% more spatial detail of soil organic carbon changes than conventional coarse-resolution approaches. Moreover, we outline a protocol for improving KGML via various paths, which can be generalized to develop hybrid models to better predict complex earth system dynamics.

 

Cover crops have long been seen as an effective management practice to increase soil organic carbon (SOC) and reduce nitrogen (N) leaching. However, there are large uncertainties in quantifying these ecosystem services using either observation (e.g. field measurement, remote sensing data) or process-based modeling. In this study, we developed and implemented a model–data fusion (MDF) framework to improve the quantification of cover crop benefits in SOC accrual and N retention in central Illinois by integrating process-based modeling and remotely-sensed observations. Specifically, we first constrained and validated the process-based agroecosystem model,ecosys, using observations of cover crop aboveground biomass derived from satellite-based spectral signals, which is highly consistent with field measurements. Then, we compared the simulated cover crop benefits in SOC accrual and N leaching reduction with and without the constraints of remotely-sensed cover crop aboveground biomass. When benchmarked with remote sensing-based observations, the constrained simulations all show significant improvements in quantifying cover crop aboveground biomass C compared with the unconstrained ones, withR²increasing from 0.60 to 0.87, and root mean square error (RMSE) and absolute bias decreasing by 64% and 97%, respectively. On all study sites, the constrained simulations of aboveground biomass C and N at termination are 29% and 35% lower than the unconstrained ones on average. Correspondingly, the averages of simulated SOC accrual and N retention net benefits are 31% and 23% lower than the unconstrained simulations, respectively. Our results show that the MDF framework with remotely-sensed biomass constraints effectively reduced the uncertainties in cover crop biomass simulations, which further constrained the quantification of cover crop-induced ecosystem services in increasing SOC and reducing N leaching.

 

High temperature and accompanying high vapor pressure deficit often stress plants without causing distinctive changes in plant canopy structure and consequential spectral signatures. Sun‐induced chlorophyll fluorescence (SIF), because of its mechanistic link with photosynthesis, may better detect such stress than remote sensing techniques relying on spectral reflectance signatures of canopy structural changes. However, our understanding about physiological mechanisms of SIF and its unique potential for physiological stress detection remains less clear. In this study, we measured SIF at a high‐temperature experiment, Temperature Free‐Air Controlled Enhancement, to explore the potential of SIF for physiological investigations. The experiment provided a gradient of soybean canopy temperature with 1.5, 3.0, 4.5, and 6.0°C above the ambient canopy temperature in the open field environments. SIF yield, which is normalized by incident radiation and the fraction of absorbed photosynthetically active radiation, showed a high correlation with photosynthetic light use efficiency (r = 0.89) and captured dynamic plant responses to high‐temperature conditions. SIF yield was affected by canopy structural and plant physiological changes associated with high‐temperature stress (partial correlationr = 0.60 and −0.23). Near‐infrared reflectance of vegetation, only affected by canopy structural changes, was used to minimize the canopy structural impact on SIF yield and to retrieve physiological SIF yield (Φ_F) signals. Φ_Ffurther excludes the canopy structural impact than SIF yield and indicates plant physiological variability, and we found that Φ_Foutperformed SIF yield in responding to physiological stress (r = −0.37). Our findings highlight that Φ_Fsensitively responded to the physiological downregulation of soybean gross primary productivity under high temperature. Φ_F, if reliably derived from satellite SIF, can support monitoring regional crop growth and different ecosystems' vegetation productivity under environmental stress and climate change.

 

Abstract Seasonal climate forecasts have socioeconomic value, and the quality of the forecasts is important to various societal applications. Here we evaluate seasonal forecasts of three climate variables, vapor pressure deficit (VPD), temperature, and precipitation, from operational dynamical models over the major cropland areas of South America; analyze their predictability from global and local circulation patterns, such as El Niño–Southern Oscillation (ENSO); and attribute the source of prediction errors. We show that the European Centre for Medium-Range Weather Forecasts (ECMWF) model has the highest quality among the models evaluated. Forecasts of VPD and temperature have better agreement with observations (average Pearson correlation of 0.65 and 0.70, respectively, among all months for 1-month-lead predictions from the ECMWF) than those of precipitation (0.40). Forecasts degrade with increasing lead times, and the degradation is due to the following reasons: 1) the failure of capturing local circulation patterns and capturing the linkages between the patterns and local climate; and 2) the overestimation of ENSO’s influence on regions not affected by ENSO. For regions affected by ENSO, forecasts of the three climate variables as well as their extremes are well predicted up to 6 months ahead, providing valuable lead time for risk preparedness and management. The results provide useful information for further development of dynamical models and for those who use seasonal climate forecasts for planning and management. Significance Statement Seasonal climate forecasts have socioeconomic value, and the quality of the forecasts is important to their applications. This study evaluated the quality of monthly forecasts of three important climate variables that are critical to agricultural management, risk assessment, and natural hazards warning. The findings provide useful information for those who use seasonal climate forecasts for planning and management. This study also analyzed the predictability of the climate variables and the attribution of prediction errors and thus provides insights for understanding models’ varying performance and for future improvement of seasonal climate forecasts from dynamical models.