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Abstract Determining the genetic architecture of traits involved in adaptation and speciation is one of the key components of understanding the evolutionary mechanisms behind biological diversification. Hybrid zones provide a unique opportunity to use genetic admixture to identify traits and loci contributing to partial reproductive barriers between taxa. Many studies have focused on the temporal dynamics of hybrid zones, but geographical variation in hybrid zones that span distinct ecological contexts has received less attention. We address this knowledge gap by analyzing hybridization and introgression between black-capped and Carolina chickadees in two geographically remote transects across their extensive hybrid zone, one located in eastern and one in central North America. Previous studies demonstrated that this hybrid zone is moving northward as a result of climate change but is staying consistently narrow due to selection against hybrids. In addition, the hybrid zone is moving ~5× slower in central North America compared to more eastern regions, reflecting continent-wide variation in the rate of climate change. We use whole genome sequencing of 259 individuals to assess whether variation in the rate of hybrid zone movement is reflected in patterns of hybridization and introgression, and which genes and genomic regions show consistently restricted introgression in distinct ecological contexts. Our results highlight substantial similarities between geographically remote transects and reveal large Z-linked chromosomal rearrangements that generate measurable differences in the degree of gene flow between transects. We further use simulations and analyses of climatic data to examine potential factors contributing to continental-scale nuances in selection pressures. We discuss our findings in the context of speciation mechanisms and the importance of sex chromosome inversions in chickadees and other species. 

Abstract Describing how hybrid zones respond to anthropogenic influence can illuminate how the environment regulates both species distributions and reproductive isolation between species. In this study, we analyzed specimens collected from the Passerina cyanea×P. amoena hybrid zone between 2004 and 2007 and between 2019 and 2021 to explore changes in genetic structure over time. This comparison follows a previous study that identified a significant westward shift of the Passerina hybrid zone during the latter half of the twentieth century. A second temporal comparison of hybrid zone genetic structure presents unique potential to describe finer-scale dynamics and to identify potential mechanisms of observed changes more accurately. After concluding that the westward movement of the Passerina hybrid zone has accelerated in recent decades, we investigated potential drivers of this trend by modeling the influence of bioclimatic and landcover variables on genetic structure. We also incorporated eBird data to determine how the distributions of P. cyanea and P. amoena have responded to recent climate and landcover changes. We found that the distribution of P. cyanea in the northern Great Plains has shifted west to track a moving climatic niche, supporting anthropogenic climate change as a key mediator of introgression in this system. 

As individual tracking devices and year‐round genetic sampling become more accessible, research on the historically understudied nonbreeding period has exploded in the past decade. These studies are revealing tremendous inter‐ and intraspecific variation in migratory, molting, and other nonbreeding strategies, thereby informing efforts to protect bird populations throughout the entire annual cycle. However, we still have much to learn about where and when nonbreeding adaptive variation influences reproductive isolation and speciation. Previous work has demonstrated that some adaptations to conditions in different nonbreeding areas or migratory routes can fuel diversification by precluding opportunities for diverging lineages to interbreed or, in instances where lineages do interbreed, manifesting as disadvantageous phenotypes in hybrids. In this paper, we provide an overview of both established and speculative processes through which the primary nonbreeding events in the avian annual cycle (i.e. molt, migration, and overwintering) may interact to regulate gene flow between avian lineages. Although the relatively few but well‐described examples of divergence in nonbreeding phenotypes contributing to reproductive isolation suggest nonbreeding divergence is a common mode of speciation in birds, a growing number of population genetic studies reporting nonbreeding divergence in the absence of reproductive isolation seemingly suggest the opposite conclusion. We outline processes that could result in this apparent contradiction and propose general comparative frameworks to test factors that may predictably mediate the relationship between nonbreeding divergence and reproductive isolation. In the past, a shortage of nonbreeding natural history and population genetic data have impeded our ability to test these predictions in more than just a few systems. We urge evolutionary biologists to pay closer attention to conservation‐oriented studies, which are rapidly filling these knowledge gaps and presenting opportunities to better understand the true role of nonbreeding divergence in avian diversification. 

Thermoregulatory performance can be modified through changes in various subordinate traits, but the rate and magnitude of change in these traits is poorly understood. We investigated flexibility in traits that affect thermal balance between black-capped chickadees (Poecile atricapillus) acclimated for 6 weeks to cold (−5°C) or control (23°C) environments (n=7 per treatment). We made repeated measurements of basal and summit metabolic rates via flow-through respirometry and of body composition using quantitative magnetic resonance of live birds. At the end of the acclimation period, we measured thermal conductance of the combined feathers and skins. Cold-acclimated birds had a higher summit metabolic rate, reflecting a greater capacity for endogenous heat generation, and an increased lean mass. However, birds did not alter their thermal conductance. These results suggest that chickadees respond to cold stress by increasing their capacity for heat production rather than increasing heat retention, an energetically expensive strategy.