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Abstract Human activities and climate change threaten seabirds globally, and many species are declining from already small breeding populations. Monitoring of breeding colonies can identify population trends and important conservation concerns, but it is a persistent challenge to achieve adequate coverage of remote and sensitive breeding sites. Southern giant petrels (Macronectes giganteus) exemplify this challenge: as polar, pelagic marine predators they are subject to a variety of anthropogenic threats, but they often breed in remote colonies that are highly sensitive to disturbance. Aerial remote sensing can overcome some of these difficulties to census breeding sites and explore how local environmental factors influence important characteristics such as nest-site selection and chick survival. To this end, we used drone photography to map giant petrel nests, repeatedly evaluate chick survival and quantify-associated physical and biological characteristics of the landscape at two neighboring breeding sites on Humble Island and Elephant Rocks, along the western Antarctic Peninsula in January–March 2020. Nest sites occurred in areas with relatively high elevations, gentle slopes, and high wind exposure, and statistical models predicted suitable nest-site locations based on local spatial characteristics, explaining 72.8% of deviance at these sites. These findings demonstrate the efficacy of drones as a tool to identify, map, and monitor seabird nests, and to quantify important habitat associations that may constitute species preferences or sensitivities. These may, in turn, contextualize some of the diverse population trajectories observed for this species throughout the changing Antarctic environment.