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Abstract Static maps and animations remain popular in spatial epidemiology of dengue, limiting the analytical depth and scope of visualizations. Over half of the global population live in dengue endemic regions. Understanding the spatiotemporal dynamics of the four closely related dengue serotypes, and their immunological interactions, remains a challenge at a global scale. To facilitate this understanding, we worked with dengue epidemiologists in a user‐centred design framework to create GeoDEN, an exploratory visualization tool that empowers experts to investigate spatiotemporal patterns in dengue serotype reports. The tool has several linked visualizations and filtering mechanisms, enabling analysis at a range of spatial and temporal scales. To identify successes and failures, we present both insight‐based and value‐driven evaluations. Our domain experts found GeoDEN valuable, verifying existing hypotheses and uncovering novel insights that warrant further investigation by the epidemiology community. The developed visual exploration approach can be adapted for exploring other epidemiology and disease incident datasets. 

Due to the growing volume of remote sensing data and the low latency required for safe marine navigation, machine learning (ML) algorithms are being developed to accelerate sea ice chart generation, currently a manual interpretation task. However, the low signal-to-noise ratio of the freely available Sentinel-1 Synthetic Aperture Radar (SAR) imagery, the ambiguity of backscatter signals for ice types, and the scarcity of open-source high-resolution labelled data makes automating sea ice mapping challenging. We use Extreme Earth version 2, a high-resolution benchmark dataset generated for ML training and evaluation, to investigate the effectiveness of ML for automated sea ice mapping. Our customized pipeline combines ResNets and Atrous Spatial Pyramid Pooling for SAR image segmentation. We investigate the performance of our model for: i) binary classification of sea ice and open water in a segmentation framework; and ii) a multiclass segmentation of five sea ice types. For binary ice-water classification, models trained with our largest training set have weighted F1 scores all greater than 0.95 for January and July test scenes. Specifically, the median weighted F1 score was 0.98, indicating high performance for both months. By comparison, a competitive baseline U-Net has a weighted average F1 score of ranging from 0.92 to 0.94 (median 0.93) for July, and 0.97 to 0.98 (median 0.97) for January. Multiclass ice type classification is more challenging, and even though our models achieve 2% improvement in weighted F1 average compared to the baseline U-Net, test weighted F1 is generally between 0.6 and 0.80. Our approach can efficiently segment full SAR scenes in one run, is faster than the baseline U-Net, retains spatial resolution and dimension, and is more robust against noise compared to approaches that rely on patch classification. 

Deploying deep learning on Synthetic Aperture Radar (SAR) data is becoming more common for mapping purposes. One such case is sea ice, which is highly dynamic and rapidly changes as a result of the combined effect of wind, temperature, and ocean currents. Therefore, frequent mapping of sea ice is necessary to ensure safe marine navigation. However, there is a general shortage of expert-labeled data to train deep learning algorithms. Fine-tuning a pre-trained model on SAR imagery is a potential solution. In this paper, we compare the performance of deep learning models trained from scratch using randomly initialized weights against pre-trained models that we fine-tune for this purpose. Our results show that pre-trained models lead to better results, especially on test samples from the melt season. 

Up-to-date sea ice charts are crucial for safer navigation in ice-infested waters. Recently, Convolutional Neural Network (CNN) models show the potential to accelerate the generation of ice maps for large regions. However, results from CNN models still need to undergo scrutiny as higher metrics performance not always translate to adequate outputs. Sea ice type classes are imbalanced, requiring special treatment during training. We evaluate how three different loss functions, some developed for imbalanced class problems, affect the performance of CNN models trained to predict the dominant ice type in Sentinel-1 images. Despite the fact that Dice and Focal loss produce higher metrics, results from cross-entropy seem generally more physically consistent.