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Abstract AimAnthropogenic warming of marine systems has caused biological and physiological responses that are fundamentally altering ecosystem structure. Because estuaries exist at the land‐ocean interface, they are particularly vulnerable to the effects of ocean warming as they can undergo rapid biogeochemical and hydrological shifts due to climate and land‐use change. We explored how multiple components of estuarine fish diversity—turnover, richness, and abundance—have changed in the North Atlantic and Gulf of Mexico estuaries across space and time and the drivers of change. LocationNorth Atlantic and Gulf of Mexico. TaxaFish. MethodWe compiled long‐term (>30 years), continent‐wide fisheries independent trawl surveys conducted in estuaries—from the Gulf of Maine to the Gulf of Mexico (U.S. waters)—and combined these with climate and land‐use‐land‐cover data to examine trends and ecological drivers of fish richness, abundance and turnover using mixed‐effect models. ResultsSpecies richness, abundance and turnover have increased in North Atlantic and Gulf of Mexico estuaries in the last 30 years. These changes were mediated largely by sea‐surface temperature anomalies, especially in more northern estuaries where warming has been relatively pronounced. Main ConclusionThe increasing trajectory of turnover in many estuaries suggests that fish communities have changed fundamentally from the baselines. A fundamental change in community composition can lead to an irreversible trophic imbalance or alternative stable states among other outcomes. Thus, predicting how shifting community structures might influence food webs, ecosystem stability, and human resource use remain a pertinent task. 

Major storms can alter coastal ecosystems in several direct and indirect ways including habitat destruction, stormwater-related water quality degradation, and organism mortality. From 2010–2020, ten tropical cyclones impacted coastal North Carolina, providing an opportunity to explore ecosystem responses across multiple storms. Using monthly trawl and contemporaneous seagrass surveys conducted in Back Sound, NC, we evaluated how cyclones may affect the nursery role of shallow-water biogenic habitats by examining seagrass-associated fish responses within a temperate-subtropical estuary. We employed a general before-after-control-impact approach using trawls conducted prior (before) and subsequent (after) to storm arrival and years either without (control) or with (impact) storms. We examined whether effects were apparent over short (within ~three weeks of impact) and seasonal (May-October) timescales, as well as if the magnitude of storm-related shifts varied as a function of storm intensity. Our findings suggest that the ability of these shallow-water habitats to support juvenile fishes was not dramatically altered by hurricanes. The resilience exhibited by fishes was likely underpinned by the relative persistence of the seagrass habitat, which appeared principally undamaged by storms based upon review of available–albeit limited seagrass surveys. Increasing cyclone intensity, however, was correlated with greater declines in catch and may potentially underlie the emigration and return rate of fish after cyclones. Whether estuarine fishes will continue to be resilient to acute storm impacts despite chronic environmental degradation and predicted increases major tropical cyclone frequency and intensity remains a pressing question.